Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d15r
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.8  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -2

Query: 238 IQATEVGATQYASAWILSGGLSQNN 164
           + A ++   ++   W+L  GL  NN
Sbjct: 128 VSAFKIAVDKFDRLWVLDSGLVNNN 152


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +1

Query: 205 RTELPQLPWP 234
           RT+LP++P+P
Sbjct: 264 RTDLPKVPYP 273


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 289 QYQDIVYRGNATTRITAIQA 230
           QYQD +Y G  ++     QA
Sbjct: 48  QYQDTLYSGTRSSESLTAQA 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,826
Number of Sequences: 438
Number of extensions: 2781
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)