Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d15f
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    30   0.20 
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         27   2.5  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    26   4.4  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.8  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    25   7.7  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    25   7.7  

>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 188 YVYQPARPNTIQY-QDIVYRGNATTRITAIQAT-EVGATQYASAWILSGGLSQNNVT 352
           Y YQ A PN+I +  D+    N T  + A Q T E  A      W  S  L+ +N+T
Sbjct: 127 YAYQKANPNSIAFLYDLSQSSNGTLYMRAYQLTPEFMAAHEEKTWTAS-SLNSHNLT 182


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 218 IQYQDIVYRGNATTRITAIQATEVGATQYAS 310
           +Q+QDIVYR N +      QA      Q+ S
Sbjct: 81  VQFQDIVYRSNTSASEIHFQAENAPLVQWYS 111


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 266 TAIQATEVGATQYASAWILSGGLSQNNVTVRFQS 367
           TA+ +T +G  +  +  I SG L +NNV  +F S
Sbjct: 33  TAVNSTTLGLAEKVNFAITSGLLDRNNVWRQFTS 66


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 246 VTQRRALRLYRPRKLGQLSTHQPGSCLAGSVRTTSRSDSNQL 371
           V Q R + L R   L +  ++ PGSCL G+   T+   + QL
Sbjct: 402 VAQLRDIVL-RSETLAENPSNMPGSCLPGASSNTADEFTEQL 442


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 4   SQSWCNNRCCQQSVAHLKDEY 66
           + +WCN  C  Q    LK++Y
Sbjct: 329 NHNWCNASCILQMYTALKEQY 349


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 302 YASAWILSGGLSQNNVTV-RFQSARG-YGYYYLFDVWG 409
           Y +A I +  +S  +    +   ARG YGY ++F +WG
Sbjct: 226 YTAAQIAAAAVSLVSAGFQKMDGARGLYGYQWMFLIWG 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,940
Number of Sequences: 5004
Number of extensions: 44456
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)