Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d15f
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-11|CAB07698.2|  536|Caenorhabditis elegans Hypothetical p...    27   7.0  
U64852-3|ABH03525.1|  740|Caenorhabditis elegans Uncoordinated p...    27   7.0  
U64852-2|ABH03524.1|  975|Caenorhabditis elegans Uncoordinated p...    27   7.0  
U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated p...    27   7.0  
AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.     27   7.0  
AF088285-1|AAC98292.1|  536|Caenorhabditis elegans caspase-relat...    27   7.0  

>Z93393-11|CAB07698.2|  536|Caenorhabditis elegans Hypothetical
           protein Y48E1B.13a protein.
          Length = 536

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 357 DSNQLEDTDIITSSTYGDANFFDNSSFIKLSKYCT*HSYLQETILS*SDQFI 512
           D N  + T  ++SST      F+        + C   SY +E IL  +D+F+
Sbjct: 21  DFNNFQTTSSMSSSTTISTEDFNTIEIESTFEICRSGSYTEEPILGENDEFL 72


>U64852-3|ABH03525.1|  740|Caenorhabditis elegans Uncoordinated
           protein 83, isoform c protein.
          Length = 740

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = +3

Query: 219 FNTKT*CIAVTQRRALRLYRPRKLGQLSTHQPGSCLAGSVRTTSRSDSNQLEDTDIITSS 398
           FNTK   I   ++   R  RP +  Q++     SC A S  ++   +   LED   + S 
Sbjct: 145 FNTKWREIHGQKKPLRRASRPSR-EQMNLIAKSSCDASSEDSSEGENQTNLEDDPEMMSV 203

Query: 399 TYGDANFFDNSSFIK 443
           ++  A  FD SS +K
Sbjct: 204 SFNSAQ-FDTSSPLK 217


>U64852-2|ABH03524.1|  975|Caenorhabditis elegans Uncoordinated
           protein 83, isoform b protein.
          Length = 975

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = +3

Query: 219 FNTKT*CIAVTQRRALRLYRPRKLGQLSTHQPGSCLAGSVRTTSRSDSNQLEDTDIITSS 398
           FNTK   I   ++   R  RP +  Q++     SC A S  ++   +   LED   + S 
Sbjct: 380 FNTKWREIHGQKKPLRRASRPSR-EQMNLIAKSSCDASSEDSSEGENQTNLEDDPEMMSV 438

Query: 399 TYGDANFFDNSSFIK 443
           ++  A  FD SS +K
Sbjct: 439 SFNSAQ-FDTSSPLK 452


>U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated
           protein 83, isoform a protein.
          Length = 1041

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = +3

Query: 219 FNTKT*CIAVTQRRALRLYRPRKLGQLSTHQPGSCLAGSVRTTSRSDSNQLEDTDIITSS 398
           FNTK   I   ++   R  RP +  Q++     SC A S  ++   +   LED   + S 
Sbjct: 446 FNTKWREIHGQKKPLRRASRPSR-EQMNLIAKSSCDASSEDSSEGENQTNLEDDPEMMSV 504

Query: 399 TYGDANFFDNSSFIK 443
           ++  A  FD SS +K
Sbjct: 505 SFNSAQ-FDTSSPLK 518


>AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.
          Length = 1041

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = +3

Query: 219 FNTKT*CIAVTQRRALRLYRPRKLGQLSTHQPGSCLAGSVRTTSRSDSNQLEDTDIITSS 398
           FNTK   I   ++   R  RP +  Q++     SC A S  ++   +   LED   + S 
Sbjct: 446 FNTKWREIHGQKKPLRRASRPSR-EQMNLIAKSSCDASSEDSSEGENQTNLEDDPEMMSV 504

Query: 399 TYGDANFFDNSSFIK 443
           ++  A  FD SS +K
Sbjct: 505 SFNSAQ-FDTSSPLK 518


>AF088285-1|AAC98292.1|  536|Caenorhabditis elegans caspase-related
           protein 1A protein.
          Length = 536

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 357 DSNQLEDTDIITSSTYGDANFFDNSSFIKLSKYCT*HSYLQETILS*SDQFI 512
           D N  + T  ++SST      F+        + C   SY +E IL  +D+F+
Sbjct: 21  DFNNFQTTSSMSSSTTISTEDFNTIEIESTFEICRSGSYTEEPILGENDEFL 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,349,403
Number of Sequences: 27780
Number of extensions: 242855
Number of successful extensions: 540
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)