Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d13r
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   6.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.0  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 676 NTHXQFSND*SLYNVYKNLKNSINY 602
           N +  ++ + + YN YK L  +INY
Sbjct: 99  NNYNNYNYNNNNYNNYKKLYYNINY 123


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 134 TNYHIINTKN*KNVGTYNLNLNKQRFIESI 223
           +NY+  N  N  N   YN  L  + +I +I
Sbjct: 325 SNYNNYNNYNNNNYNNYNKKLYYKNYIINI 354


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 646 SLYNVYKNLKNSINYSVMPEIYLILS*EIFIHIKLLF 536
           SL  +  N++   NY+++ +IY  LS +  + +   F
Sbjct: 104 SLEKLLCNVEAEENYNLLEDIYETLSYDCDVDVSTFF 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,455
Number of Sequences: 438
Number of extensions: 2901
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)