Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13d08r
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c... 29 0.83
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 28 1.1
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 27 1.9
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 27 3.4
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace... 26 4.4
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 26 4.4
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 7.8
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 25 7.8
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 25 7.8
>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 28.7 bits (61), Expect = 0.83
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 547 GGHQVPSIVVHSKEVSGSSD-QHSFFLGEL 633
G VP+I +H K V G+SD Q F GEL
Sbjct: 65 GQRTVPNIFIHQKHVGGNSDFQALFKKGEL 94
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 618 ERVLIRGTADFFGVNHYTGYLVSATKHIP 532
+R+ RG+ D+ +YT Y + A+ H P
Sbjct: 1088 DRICYRGSPDYISAENYTRYELKASDHRP 1116
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 441 LMPNSIYDVLTHLKNKYNDPIFYVTENGWATSPEVG-LEDDDRI 313
L PNS +TH + K+ P+ T N +P+ L D D +
Sbjct: 271 LSPNSSQSQITHNRRKHKLPLNATTNNSVVLTPDTSPLLDSDEV 314
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +1
Query: 370 DVKYGIIVFVLEMCQHVINAVW 435
D + G++VF++ MCQ++ + W
Sbjct: 385 DQERGVVVFLMNMCQNIWHIWW 406
>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
N-acetylglucosaminyltransferase Alg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 26.2 bits (55), Expect = 4.4
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -3
Query: 402 KNKYNDP--IFYVTENGWATSPEV-GLEDDDRITYYRAALENILDSLDAGVRLKGYMAWS 232
K + DP + +T G+ +PE+ D I A +IL +L +G RL S
Sbjct: 44 KQAFGDPKSVAGLTILGFDYAPEIESYIHDASIVISHAGAGSILQTLRSGKRLLVVPNES 103
Query: 231 LMDNYE 214
LMDN++
Sbjct: 104 LMDNHQ 109
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 26.2 bits (55), Expect = 4.4
Identities = 34/145 (23%), Positives = 54/145 (37%)
Frame = -3
Query: 573 HYTGYLVSATKHIPEYSTVSLFSDINVGNYRPPEWLQSAASWLTLMPNSIYDVLTHLKNK 394
HY + K + EY+ S ++ +R PE + + +S D++ HL
Sbjct: 175 HYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPV 234
Query: 393 YNDPIFYVTENGWATSPEVGLEDDDRITYYRAALENILDSLDAGVRLKGYMAWSLMDNYE 214
PI+ G E L+ IT + D + LKG S +D
Sbjct: 235 AKHPIYQSLLGGGDIQNE-SLQQVPEITKF--------DPTTREIYLKGGKVLSNIDRVI 285
Query: 213 WMAGYTERFGLYEVDFSDPARPRTP 139
+ GY LY V F A+ ++P
Sbjct: 286 YCTGY-----LYSVPFPSLAKLKSP 305
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 117 KEILRSRVIDHDYEP 73
KE+L+ VIDHD EP
Sbjct: 1076 KELLQEVVIDHDLEP 1090
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/65 (24%), Positives = 25/65 (38%)
Frame = -3
Query: 576 NHYTGYLVSATKHIPEYSTVSLFSDINVGNYRPPEWLQSAASWLTLMPNSIYDVLTHLKN 397
N Y Y S T + + ++ G R ++ W L P DV+ + +
Sbjct: 400 NPYQNYTTSNTSVVNAFEPYDTIDLVDGGEDR-----ENIPLWPLLHPQRFVDVVFAIDS 454
Query: 396 KYNDP 382
YNDP
Sbjct: 455 TYNDP 459
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/65 (24%), Positives = 25/65 (38%)
Frame = -3
Query: 576 NHYTGYLVSATKHIPEYSTVSLFSDINVGNYRPPEWLQSAASWLTLMPNSIYDVLTHLKN 397
N Y Y S T + + ++ G R ++ W L P DV+ + +
Sbjct: 400 NPYQNYTTSNTSVVNAFEPYDTIDLVDGGEDR-----ENIPLWPLLHPQRFVDVVFAIDS 454
Query: 396 KYNDP 382
YNDP
Sbjct: 455 TYNDP 459
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,871
Number of Sequences: 5004
Number of extensions: 63149
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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