Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13d08f
(596 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical ... 139 1e-33
U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical pr... 134 5e-32
AY383563-1|AAQ96595.1| 539|Caenorhabditis elegans excitatory GA... 29 2.5
AF098990-1|AAC67448.3| 539|Caenorhabditis elegans Expulsion def... 29 2.5
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 29 3.3
AF106583-12|AAD03133.1| 432|Caenorhabditis elegans Hypothetical... 28 4.4
U88311-1|AAB42346.1| 177|Caenorhabditis elegans Hypothetical pr... 28 5.8
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 27 7.7
>AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical
protein E02H9.5 protein.
Length = 475
Score = 139 bits (337), Expect = 1e-33
Identities = 67/165 (40%), Positives = 102/165 (61%), Gaps = 1/165 (0%)
Frame = +3
Query: 81 RFPDDFLFGTATASYQIEGAWDEDGKGENIWDYMTHNNPTVIADESNGDIAADSYHNVER 260
+FP +F TATA+YQIEGA D +G+G + WD + P I D S+ D++ D +
Sbjct: 6 KFPKNFKLATATAAYQIEGAKDLNGRGFSTWDAI-RLEPGRILDNSDPDLSCDGLLKYKE 64
Query: 261 DVEMMRELGLDVYRFSVSWSRILPSGFANEVNEAGVDYYNRLINEMLKYNITPMISLYHW 440
DV ++ E+G+ YRFS+SWSRILP G + +NE G+ +Y L + + NI P+++L+H+
Sbjct: 65 DVALLAEIGVTNYRFSISWSRILPDGTLSTINEEGIKFYRDLCLLLKENNIEPVVTLFHF 124
Query: 441 DLPQKLQELG-GFANPLIADWFEDYVRVVFAKLGDRVKLWITFNE 572
D+P + + G + N + FE + + F K GD VK WIT+NE
Sbjct: 125 DMPLAIYDNGTAWLNRENCEHFEKFADLCFQKFGDLVKTWITYNE 169
>U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical
protein C50F7.10 protein.
Length = 479
Score = 134 bits (324), Expect = 5e-32
Identities = 64/165 (38%), Positives = 99/165 (60%), Gaps = 1/165 (0%)
Frame = +3
Query: 81 RFPDDFLFGTATASYQIEGAWDEDGKGENIWDYMTHNNPTVIADESNGDIAADSYHNVER 260
+FP +F TATA+YQIEGA + DG+G + WD + N I D S+ D++ + +
Sbjct: 6 KFPKNFQLATATAAYQIEGAKNLDGRGFSTWDSIRSENGR-IHDNSDPDLSCEGRLKYKE 64
Query: 261 DVEMMRELGLDVYRFSVSWSRILPSGFANEVNEAGVDYYNRLINEMLKYNITPMISLYHW 440
DV ++ ++G+ YRFS+SWSRILP G +NE G+ +Y + + I P+++L+H+
Sbjct: 65 DVALLSKIGVTSYRFSISWSRILPDGTLKTINEDGIQFYRDICLLLRDNGIEPIVTLFHF 124
Query: 441 DLPQKLQELG-GFANPLIADWFEDYVRVVFAKLGDRVKLWITFNE 572
D+P + + G + N + FE + + F K GD VK WITFNE
Sbjct: 125 DMPLSIYDNGTSWLNKENCEHFEKFADLCFQKFGDLVKTWITFNE 169
>AY383563-1|AAQ96595.1| 539|Caenorhabditis elegans excitatory GABA
receptor EXP-1B protein.
Length = 539
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 575 GFVESNPELDSVTQFGENHAYVVFKPIGYQWIGKTSQFLQLLRQV 441
G + PE+ F + + VF G G+T FLQ LR++
Sbjct: 65 GQAQHRPEMTESENFAQPNTESVFSSGGVDSYGETRDFLQFLRRI 109
>AF098990-1|AAC67448.3| 539|Caenorhabditis elegans Expulsion
defective (defecation)protein 1 protein.
Length = 539
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 575 GFVESNPELDSVTQFGENHAYVVFKPIGYQWIGKTSQFLQLLRQV 441
G + PE+ F + + VF G G+T FLQ LR++
Sbjct: 65 GQAQHRPEMTESENFAQPNTESVFSSGGVDSYGETRDFLQFLRRI 109
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 153 GKGENIWDYMTHNNPTVIADESNGDIAADSYHNVERDVE 269
GK + I + TH P ++A ++A D Y +V +E
Sbjct: 923 GKPKTITGFQTHTTPVLLAHGERAELANDEYLSVTPHLE 961
>AF106583-12|AAD03133.1| 432|Caenorhabditis elegans Hypothetical
protein F23C8.11 protein.
Length = 432
Score = 28.3 bits (60), Expect = 4.4
Identities = 24/99 (24%), Positives = 40/99 (40%)
Frame = +3
Query: 144 DEDGKGENIWDYMTHNNPTVIADESNGDIAADSYHNVERDVEMMRELGLDVYRFSVSWSR 323
+ DG E + + +ADE++ D + D HN R EM+ D R S S S+
Sbjct: 59 ESDGDDEEVHEEYVQQE---LADENHFDYSYDEGHNFNRQDEML-PASEDQKRRSSSNSK 114
Query: 324 ILPSGFANEVNEAGVDYYNRLINEMLKYNITPMISLYHW 440
+ D +N L + T +I L+++
Sbjct: 115 TPTKALPRDTTAVDFDVFNHL---QTGQSFTTIIGLFYF 150
>U88311-1|AAB42346.1| 177|Caenorhabditis elegans Hypothetical
protein C10H11.7 protein.
Length = 177
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 498 WFEDYVRVVFAKLGDRVKLWITFNEP 575
WF V F K G++V + +TFN P
Sbjct: 83 WFRSKPSVGFIKSGEKVHVRVTFNSP 108
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -3
Query: 537 PIWRKPRVRSLQTNRLSVDWQNLPIPATFEASPSD 433
P+ ++ ++ SLQ+N+ S + Q+ + A E +PSD
Sbjct: 900 PMKQQIKLTSLQSNKTSQEHQSTTLQAPVEEAPSD 934
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,866,162
Number of Sequences: 27780
Number of extensions: 273309
Number of successful extensions: 842
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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