Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d07r
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    28   1.1  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   1.9  
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    27   3.3  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    26   5.8  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   7.7  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   7.7  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   7.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.7  

>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 528 WRFSPHCLQKHHPPSLRVQYHQE--RLGYSH 442
           W  + HCL K   P+L V  H+E   +GYS+
Sbjct: 151 WDVTRHCLGKFKVPNLYVPRHEEWRMMGYSY 181


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 494 THPHYVSNTIKNDLGILITSSNIVFNNRVRPISLSFD 384
           T   Y+S+ I    G+L++SS I   N V  ++LSF+
Sbjct: 852 TFQKYLSSFINRKFGVLLSSSFIQQLNTVENLNLSFN 888


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 80  MRKGSPTTRCRLGDRCRSEPMRCHCHHCKY 169
           ++ G+  TR ++GDR   + M   C +C+Y
Sbjct: 76  VKVGAGVTRLKIGDRVGVKWMNSSCGNCEY 105


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 356 VAGWGRVRANGALSTNLLEINVRTIDGQT 270
           ++GW  V A   +  +LL + V TI+G+T
Sbjct: 208 LSGWNPVPAEFVIQGHLLYLTVLTIEGKT 236


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 24/75 (32%), Positives = 32/75 (42%)
 Frame = -2

Query: 518 LHTVSRNITHPHYVSNTIKNDLGILITSSNIVFNNRVRPISLSFDYVPGGVPVRVAGWGR 339
           LH V R         +    ++ IL  S + VFNN+V   S  F      + V V    R
Sbjct: 435 LHDVIRTYQAKKLFEDWKITNMPILRDSVSNVFNNQVLCSSNFFQ--KDNLLVIVHESPR 492

Query: 338 VRANGALSTNLLEIN 294
           V  NG   TN+L +N
Sbjct: 493 VLGNGTSETNVLNLN 507


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 140 MRCHCHHCKYQFLLRGMCRARYEVR 214
           ++C CH   Y++  R M R+  E R
Sbjct: 425 VKCTCHDATYEYTRRKMIRSLIEFR 449


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -1

Query: 216 CRTSYRALHIPRRRNWYLQW*QWQRIGSDRQRSP 115
           CR       I +  NW L   QWQ I SDRQ  P
Sbjct: 130 CRQPCARASIAKDMNWDLT--QWQPIISDRQFLP 161


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 522  TSRVPLVCADCQTKISRETSKCEYSXNAMSSGEHRACGEH 641
            TS      A  +T +SR  SK E    + SS +    GEH
Sbjct: 1268 TSSSMASAAPARTSVSRSKSKAERHETSTSSRKSSKSGEH 1307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,225
Number of Sequences: 5004
Number of extensions: 55212
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)