Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d07r
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757     32   0.48 
06_03_1476 - 30399317-30399347,30399636-30399722,30400035-304001...    30   2.0  
05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928           30   2.0  
03_01_0111 + 884501-884970,885069-885147,885530-885574,885838-88...    29   3.4  
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734...    29   3.4  
12_02_1202 - 26957254-26957778                                         28   6.0  
02_05_0310 + 27769988-27770830                                         28   6.0  

>02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757
          Length = 397

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +3

Query: 51  TLTNMSGAPRCAREAPRHDADLETAVGPSQCAATVTIASTSSFCVECAELDMRFDRRSPH 230
           T T  S AP  +R AP   A  +   G    AAT    + +++  + +   ++ D   PH
Sbjct: 161 TTTTSSPAPSYSRPAPHDAAPYQALYGGPYAAATARTPAAAAYHAQVSPFHLQLDTTHPH 220


>06_03_1476 -
           30399317-30399347,30399636-30399722,30400035-30400192,
           30400276-30400497,30400744-30400881,30400977-30401105,
           30401346-30401369,30401569-30401614,30401692-30401773,
           30401836-30401955,30402039-30402072
          Length = 356

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +3

Query: 75  PRCAREAPRHDADLETAVGPSQCAATVTIASTSSFCVECAELDMRFDRRSPHVKVNG 245
           P C        A  +  VG     A++ +   SSF +EC+++ +   +++ H K+ G
Sbjct: 282 PYCFMRRFLKAAQSDKKVGQKHTGASIFVLIYSSFAMECSKMMVELHQKAGHGKLTG 338


>05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928
          Length = 244

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 169 VLAMVTVAAHWLGPTAVSKSASCRGASLAHRGAPDMFVRVSAFRSWLQQNI 17
           +LAM+ + A  LG TA   + +  G      G P      S + SWLQ++I
Sbjct: 36  LLAMMLLIAFLLGLTAFGFAVTAGGGGTQVPGRPYREYHTSDYSSWLQKHI 86


>03_01_0111 +
           884501-884970,885069-885147,885530-885574,885838-885903,
           886362-886420,886626-886701,886825-886956,887046-887153,
           887679-887733,887822-888042
          Length = 436

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -1

Query: 123 RSPSRHRVVGLPLRIGELLTCSSESAPSGPGCN 25
           RSPSR + +GLPL  G LL  S  S  + P  N
Sbjct: 54  RSPSRSQALGLPLPFG-LLHASRRSLSTSPRSN 85


>01_02_0118 +
           11271020-11271293,11272849-11273145,11273226-11273439,
           11273563-11273672,11273746-11273945,11274439-11274501,
           11274560-11274663,11274868-11275055,11275129-11275328,
           11275463-11275693
          Length = 626

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 567 KSSSDSRHKPME--LWRFSPHCLQKHHP 490
           +S SDS HK ++   W F P  + +HHP
Sbjct: 144 QSDSDSSHKKLQGLSWSFPPSIVLEHHP 171


>12_02_1202 - 26957254-26957778
          Length = 174

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 194 CTFHAEGTGTC-NGDSGSALARTDSG 120
           C+F+  GTG+C  GD   AL+ T SG
Sbjct: 75  CSFNGAGTGSCATGDCAGALSCTLSG 100


>02_05_0310 + 27769988-27770830
          Length = 280

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 188 FHAEGTGTCNGDSGSALARTDSGLQVGIVSWG 93
           F  +G G C  +S S L R  S L+  + SWG
Sbjct: 79  FDHDGGGGCGPESFSGLLRELSELEQSVASWG 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,987,520
Number of Sequences: 37544
Number of extensions: 442616
Number of successful extensions: 1422
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1422
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)