Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d07r
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    78   9e-17
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.6  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   8.2  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   8.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 77.8 bits (183), Expect = 9e-17
 Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 16/208 (7%)
 Frame = -2

Query: 659 LVCGGSVLTARSVLTAAHCIXAVFTLGSLSGNLRLTVGTNQWNS-----GGSLHTVSRNI 495
           ++CG ++++ R VLTAAHCI     +   +  L + VG + W+S        LH++++ I
Sbjct: 186 MICGATIISKRYVLTAAHCI-----IDENTTKLAIVVGEHDWSSKTETNATVLHSINKVI 240

Query: 494 THPHY----VSNTIKNDLGILITSSNIVFNNRVRPISLSFDYVP---GGVPVRVAGWGRV 336
            HP Y      +   ND+ +L T  +I F ++V P  L F +      G  V V GWG  
Sbjct: 241 IHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHT 300

Query: 335 RANGALSTNLLEINVRTIDGQTCVRTAAQAAIDLNVRAPPVEPHIELCTFHAEGTGTCNG 156
             NG LS  L +  +  +    C +      ++             +C + A+G   C  
Sbjct: 301 SFNGMLSHILQKTTLNMLTQVECYKYYGNIMVN------------AMCAY-AKGKDACQM 347

Query: 155 DSGSAL----ARTDSGLQVGIVSWGFPC 84
           DSG  +     RT   + +GI+SWG  C
Sbjct: 348 DSGGPVLWQNPRTKRLVNIGIISWGAEC 375


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 557 LTVGTNQWNSGGSLHTVSRNI 495
           L+ GTN W+SG       RN+
Sbjct: 263 LSGGTNHWDSGRRKSAAQRNV 283


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 402 RPDAVIENDVRGSYENT 452
           RPD V+ N+  G+YE T
Sbjct: 112 RPDIVLYNNADGNYEVT 128


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 504 QKHHPPSLRVQYHQERLGYSHNFLEHRFQ 418
           Q H   S     +QER GY  +  +H+ Q
Sbjct: 105 QHHQDSSSEHASNQERFGYFSSLKDHQHQ 133


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = +2

Query: 149 HCHHCKYQFLLRGMCRARYEVRQEE 223
           HC HC  QF+     R    V   E
Sbjct: 39  HCSHCDRQFVQVANLRRHLRVHTGE 63


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/14 (42%), Positives = 7/14 (50%)
 Frame = +2

Query: 152 CHHCKYQFLLRGMC 193
           CH CKY   +   C
Sbjct: 43  CHKCKYGIAMSSAC 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,479
Number of Sequences: 438
Number of extensions: 3920
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)