Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d07f
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717     30   1.8  
05_01_0430 - 3406472-3406490,3406662-3406681,3407330-3407428,340...    30   1.8  
03_02_0895 + 12230683-12230844,12230937-12230991,12231106-122311...    29   2.4  
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734...    29   3.1  
01_01_0769 - 5944910-5946613,5946768-5946887,5948243-5948300,594...    28   5.5  

>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
          Length = 1055

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -2

Query: 187 PYGGGCPELPGYPPQYERSGPHARRRWTCHLQAWGG 80
           P  G     P  PPQ E  G H   R+ C  Q  GG
Sbjct: 76  PRSGRPKNQPSPPPQEEEEGNHGSARYDCTFQDEGG 111


>05_01_0430 -
           3406472-3406490,3406662-3406681,3407330-3407428,
           3407810-3407880,3407956-3408127
          Length = 126

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 193 LLPYGGGCPELPGYPPQYERSGPHARRRW-TCHLQAWGGPRQPQRAP 56
           LL  GG  P  PG+           RRRW +   +  GG R+PQ +P
Sbjct: 3   LLQAGGAEPRPPGFGSSGSPCRRRHRRRWCSWAARRMGGGRRPQESP 49


>03_02_0895 +
           12230683-12230844,12230937-12230991,12231106-12231169,
           12231292-12231334,12231509-12231607,12231710-12231778,
           12231912-12232245,12232317-12232471,12232592-12233287
          Length = 558

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +2

Query: 155 ARQLRAATPIW*Q*LMVSSSGALSAEAQCSPHARCSP 265
           ARQ   A   W      SSSGA +A     PH RC P
Sbjct: 366 ARQAAPAPGYWPNCGFASSSGAGTASRSFLPHGRCPP 402


>01_02_0118 +
           11271020-11271293,11272849-11273145,11273226-11273439,
           11273563-11273672,11273746-11273945,11274439-11274501,
           11274560-11274663,11274868-11275055,11275129-11275328,
           11275463-11275693
          Length = 626

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +3

Query: 312 KSSSDSRHKPME--LWRFSPHCLQKHHP 389
           +S SDS HK ++   W F P  + +HHP
Sbjct: 144 QSDSDSSHKKLQGLSWSFPPSIVLEHHP 171


>01_01_0769 -
           5944910-5946613,5946768-5946887,5948243-5948300,
           5948544-5948627,5949356-5949456,5949562-5949745,
           5950746-5950774,5951134-5951226
          Length = 790

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +3

Query: 228 RRLSAHRTLGAHRCSLHCCCIHTWKSLWKSSSDSRHKPMELWRFSPH 368
           R LS H T+G    +++CCC H        S  + HKP E W  S H
Sbjct: 687 RGLSQH-TVGRIENTMNCCCSHP-----SVSGIANHKP-EYWSGSDH 726


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,724,714
Number of Sequences: 37544
Number of extensions: 444256
Number of successful extensions: 1459
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)