Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d06f
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0523 + 9112577-9112608,9112626-9113251,9113696-9113747,911...    38   0.009
11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267...    33   0.27 
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155...    31   1.1  
05_03_0376 - 13252220-13252354,13252433-13252541,13253279-132533...    30   1.9  
07_01_0672 - 5041742-5043175                                           29   2.5  
03_06_0035 - 31201115-31203646                                         28   7.7  

>03_02_0523 +
           9112577-9112608,9112626-9113251,9113696-9113747,
           9114713-9114782
          Length = 259

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 28/133 (21%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
 Frame = +3

Query: 81  DAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFPTGNDTAARFNNNWDIVVIIHGHSGTA 260
           D+I  +E    L    + S++  N+I+   D F +      +  ++WD+  + + H G  
Sbjct: 100 DSINGIESHKMLKVQAFSSSSSSNNIS--SDAFTSSRSNGTKDTDSWDMQHLEYDHPGLM 157

Query: 261 TTTINPIVKDAFLTSGDYNVIVV-DWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLN 437
               +  +++A+   G Y+V++  D +S  +   +  V+      + I   L  L    N
Sbjct: 158 LLPYDDDIEEAYDVLGQYDVVMKNDLASGDVDGSAAGVIDEKLYSNGIEDLL-ILPRGQN 216

Query: 438 KVHIVGFNLGAHV 476
            +H+V  N+  H+
Sbjct: 217 SIHVVYANIVCHL 229


>11_06_0023 -
           19325966-19326046,19326132-19326248,19326635-19326703,
           19326922-19327119,19327388-19327591,19327688-19327828,
           19328416-19328625,19329330-19329944
          Length = 544

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 18/79 (22%), Positives = 37/79 (46%)
 Frame = +3

Query: 282 VKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFN 461
           ++D    + D NV    +   +L   + A +A   +   IA +LKN KL ++++ +    
Sbjct: 379 MQDVLFLANDDNV--ARFFDSTLEHGADAKLAANWIMGDIAAYLKNEKLSIDEIKLTPLE 436

Query: 462 LGAHVAGVTGRNLEGKVAR 518
           L   +A +    + GK+ +
Sbjct: 437 LSELIASIRNGTISGKIGK 455


>05_04_0226 +
           19215091-19215172,19215281-19215394,19215508-19215590,
           19215682-19215820,19215862-19216191,19216414-19216693,
           19216795-19216956,19217134-19217349,19217458-19217495,
           19217597-19217760,19217833-19217946,19218042-19218083,
           19218180-19218983
          Length = 855

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 269 RRRSSATVTVYYYDNIPIIVKARSSIVSSGKVVFGECNRISL 144
           R R S   T+   +NIP+++   SS   + K V G+  R+SL
Sbjct: 637 RLRLSKAPTIQNKENIPVMLNKGSSGADTSKAVAGKARRVSL 678


>05_03_0376 -
           13252220-13252354,13252433-13252541,13253279-13253337,
           13253608-13253700,13254078-13254153,13254405-13254467,
           13254535-13254629,13254743-13254845,13254930-13255024,
           13255098-13255156,13255445-13255656,13256090-13256222,
           13256691-13257081
          Length = 540

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 54  AFAFAACNGDAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFP 182
           A  F + +  ++++  R   L+K +  SNA+   I +TED FP
Sbjct: 216 AQGFDSQSSSSVKSSTRDEKLHKSFQISNAENEQILVTEDDFP 258


>07_01_0672 - 5041742-5043175
          Length = 477

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +3

Query: 141 AQRNSITLTEDHFPTGNDTAARFNNNWDIVVIIHGHSGTATTTINPIVKDAFLTSGDYNV 320
           A++  I    D F  G D  AR    W    ++HG  GT  +T+   + +      DY++
Sbjct: 217 AKKKDIMDDLDAFRDGKDYYARIGKAWKRGYLLHGPPGTGKSTMIAAMANYL----DYDI 272

Query: 321 IVVDWSSFSLST 356
             V+ +S + +T
Sbjct: 273 YDVELTSVATNT 284


>03_06_0035 - 31201115-31203646
          Length = 843

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +3

Query: 156 ITLTEDHFPTGNDTAARFNNNWDIVVIIHGHSGTATTTINPIVKDAFL-TSGD 311
           + + +DH+   N T A F+ + D +V++H  S  AT   NP++++  + T GD
Sbjct: 125 LPIPDDHY---NLTTATFSVSTDDMVLLHDFSFIATPP-NPVLREYIVATQGD 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,744,505
Number of Sequences: 37544
Number of extensions: 364941
Number of successful extensions: 1004
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)