Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13d05f
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac... 89 5e-19
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 74 1e-14
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz... 55 7e-09
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 30 0.24
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p... 28 1.3
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 26 3.9
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 26 5.1
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 26 5.1
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 25 9.0
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.0
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 25 9.0
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 9.0
>SPBC16E9.09c |||COPII vesicle coat component
Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 89.0 bits (211), Expect = 5e-19
Identities = 55/188 (29%), Positives = 99/188 (52%), Gaps = 4/188 (2%)
Frame = +2
Query: 77 ASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDP-- 250
+ A++F+ + KCF++++P V K E ++ ++ ++ T+ I + V+V +
Sbjct: 17 SQAVHFYFDGSKPKCFLKDMPKGMMVTGIVKAEQWNNEANKWV-TSNNIKIRVQVDETFA 75
Query: 251 NDRILLSRVYSLEGMISFTSSTPGEHVICMYSNST-SWFSGSQLRVHLDIQVGEHAVDYA 427
N+ ++ + FT++ G H IC S S +WFS ++ R+H+D+ + Y
Sbjct: 76 NNHLIYKNDLRSNEAVRFTTTNEGTHRICYLSTSDGAWFSSTKTRLHVDLASDDK---YN 132
Query: 428 NVAQKE-KLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTG 604
+A E + +L R+ L ++ I EQ QR RE FR TSES N RV+ W+++Q
Sbjct: 133 LIASSEDEAKDLTDRVAALNTRLESILGEQMLQRSREMTFRDTSESANSRVVRWTIVQIV 192
Query: 605 VLVIIGYW 628
VL++ W
Sbjct: 193 VLLVTCIW 200
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 74.1 bits (174), Expect = 1e-14
Identities = 49/170 (28%), Positives = 83/170 (48%)
Frame = +2
Query: 110 ERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPNDRILLSRVYSLE 289
+R+CF E + ++ + V Y+ + GG + + + +P +I+ V +
Sbjct: 30 QRECFYENLRNNDQMSVTYQTNV-----GGDQLVS------MSIYNPAGQIMHQEVPNSM 78
Query: 290 GMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAVDYANVAQKEKLTELQLR 469
SFT PG+++ C Y+++ G V ++ H V Y + + L +
Sbjct: 79 AQYSFTVKNPGKYMYCFYNDA---LDGESKEVLFNV----HGVIYISDEDLDANNPLLGK 131
Query: 470 IRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTGVLVII 619
+RQL D + ++ EQ Y RE R T+ESTN RV WWS+LQT +LV +
Sbjct: 132 VRQLHDTISKVKHEQEYFVARERIHRNTAESTNDRVKWWSILQTVILVSV 181
>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 55.2 bits (127), Expect = 7e-09
Identities = 55/202 (27%), Positives = 84/202 (41%), Gaps = 6/202 (2%)
Frame = +2
Query: 41 SSLLVIALLADCASALYFHI---AEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQT 211
SSL + L AL F I E C E + + VIVN K G M
Sbjct: 7 SSLFFMLALLTVVHALNFDIPAKTNPEPFCLREYVGEKNLVIVNLKTT-------GNMGD 59
Query: 212 TPGIGMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLR--- 382
+ M + N + V E ++F IC + T S+ +
Sbjct: 60 GQTLSMMITDSSGNTHSSIQNVLG-EKSVAFDVDASAMLDICFLNTLTPGAIESEHKKRS 118
Query: 383 VHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSES 562
V L+ VG A DY+++ + L ++ IR+ D + +I + Y + RE RFR T+ES
Sbjct: 119 VKLEFTVGADADDYSSLQKANNLEPVEADIRRARDFIEEIKGKIYYLQAREARFRNTNES 178
Query: 563 TNQRVLWWSLLQTGVLVIIGYW 628
TN+RV ++ L L ++ W
Sbjct: 179 TNERVKNFAYLTFISLFVLVIW 200
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 30.3 bits (65), Expect = 0.24
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 483 WIKYTRSQRSRLTRGKEKSVFDKHQKAQTSECSGGVCYRQ 602
W+ + S+R L + ++++V K ++ Q CS VC R+
Sbjct: 266 WLSLSESERRSLVKVEKEAVLQKMKEQQKYSCSCSVCGRK 305
>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 392
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 119 CFIEEIPDDTTVI-VNYKVELYDPKSGGFMQTTPGIGMHV 235
C++ ++ DDT ++ +NY + Y PK Q GI + V
Sbjct: 49 CYMFKLMDDTGIVELNYSLSKYSPKFEMLRQLQLGISVFV 88
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 125 IEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPNDRILLSR 274
I + DD T+I+ +++ P G+ ++PGI + +PN I+ R
Sbjct: 157 IASVGDDCTLII-WRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER 205
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 128 EEIPDDTTVIVNYKVELYDPKSGGF 202
+++ DD NYKV L KSGGF
Sbjct: 820 QQLIDDFHTNENYKVFLLSTKSGGF 844
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 315 VLDVNEIIPSNE*TRDNSILSFGSRTS 235
V D+ EI+PS T NS+ GS T+
Sbjct: 533 VTDIKEILPSQHDTPHNSVKLTGSSTT 559
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 410 HAVDYANVAQKEKLTELQLRIRQL--LDQVHQITKEQAYQ 523
+AVDY + K+K+ +L+ I +L D V + E Y+
Sbjct: 147 NAVDYIIQSAKDKVQKLEAEIEELSTADDVDDVLLESKYE 186
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 254 DRILLSRVYSLEGMISFTSS 313
DR+ LS +Y+L+ ++ F SS
Sbjct: 170 DRVFLSEIYALKILVEFLSS 189
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 317 PGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAVDYANVA-QKEKLTELQLRIRQLLDQV 493
PG H I + + S +G+Q + +++ + +A Q K+ E ++ R + +
Sbjct: 117 PGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIE-PIQSRCAILRY 175
Query: 494 HQITKEQAYQR 526
++T +Q QR
Sbjct: 176 SRLTDQQVLQR 186
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 488 QVHQITKEQAYQRQREERFRQTSESTNQRVLWWSL 592
++ + K++ Q REER+RQ +E + ++ L
Sbjct: 535 EISKRRKQRKAQEMREERYRQRAERDTEEQIYSEL 569
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,960
Number of Sequences: 5004
Number of extensions: 50919
Number of successful extensions: 155
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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