Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d03r
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    28   1.3  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    25   8.8  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.8  

>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 623 RTHRVCQRSWSSLDEWCYSRGPELG 549
           R   + + SW  +DEWC   G E+G
Sbjct: 628 RHDSIHELSWIDVDEWCIRGGSEIG 652


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 372 PPLLLAANSVVTLVSQLVSFVLDRSMTGSIVS 277
           PP LL+   +V L+   V   LDR +   IVS
Sbjct: 672 PPTLLSRFDLVYLILDRVDETLDRKLANHIVS 703


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 754 DDTRPNLVQPNDISLLRLHRPVVFTRYLQPIRVQSSAD 641
           D     LV PN+   + +H PVV T Y      +S A+
Sbjct: 132 DSPNMQLVVPNNFQQMFIHHPVVDTIYSPEESSESQAE 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,002
Number of Sequences: 5004
Number of extensions: 51359
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)