Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13d03r
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493... 36 0.046
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 31 1.3
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 30 2.3
02_04_0123 + 19961904-19962096,19962836-19963029,19963334-199634... 29 4.0
05_04_0452 - 21373876-21375531 29 5.3
01_06_0807 + 32125987-32126029,32126030-32126208,32126760-321269... 29 5.3
05_07_0199 + 28365335-28365603,28367687-28368554 28 7.0
04_04_1055 + 30444235-30446649 28 7.0
12_01_0863 - 8179535-8179774,8180301-8180364,8180505-8180896 28 9.2
01_06_0049 - 25953811-25954131,25954223-25954903 28 9.2
>01_06_0102 -
26447286-26448107,26448248-26448385,26448990-26449359,
26449505-26449606,26449696-26449788,26449934-26450181,
26451088-26451274,26451825-26452043,26452464-26452660,
26453545-26453875,26454099-26454457,26455141-26455240,
26455349-26455464,26455547-26455663,26455782-26455880,
26456057-26456131,26456205-26456286,26457724-26457763,
26458685-26458769,26458924-26459055
Length = 1303
Score = 35.5 bits (78), Expect = 0.046
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -2
Query: 635 QELRRTHRVCQRSWSSLDEWCYSRGPELGILACCRQPDLRPQLRHPDYA 489
+E+RR V + + S+ WC+ R P L IL C + + + HP Y+
Sbjct: 210 KEIRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIW-AIEHPTYS 257
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +2
Query: 242 LVVVKIFEIYSRDTIEPVMERSRTNETSWETRVTTEFAASNKGGHTDQN-RYTLRIHVDE 418
L+ + + + + ++ + E + ET+ + EF A + DQN +++ V+
Sbjct: 372 LIPLPSYPVLEKLPVKVLPEMNEMKETN-HAHLQAEFLAPDDCTAGDQNYALPIKVEVES 430
Query: 419 WTAAVTLASRL*RHIEESGADRIRRNQGAEVE 514
W A + + I +SG D RR + + E
Sbjct: 431 WVADIRKKEAAMQTITDSGEDNSRRPRSGDSE 462
>09_06_0147 +
21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 542 QVYPVQDLGSSTIRPETTMTAGIHGESVVVPEGISRRLHTN 664
Q YP QD +IRP + G+ V PEG ++ HT+
Sbjct: 488 QQYPSQDSEQVSIRPVAQEPLSMDGQLVQGPEGTAQTPHTD 528
>02_04_0123 +
19961904-19962096,19962836-19963029,19963334-19963465,
19963921-19964038,19964248-19964484,19964576-19964658,
19964777-19965004,19965394-19965470,19965590-19965626,
19965786-19965952,19966156-19966234,19966301-19966378,
19967459-19967575,19967999-19968379,19968453-19968590,
19968680-19968769,19968832-19968840
Length = 785
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 447 LLARVTAAVHSSTWILRVYRF*SV*PPLLLAANSVVTLVSQLVSFV 310
+L A V SS+ R++ F + PPLL + V+QL+ F+
Sbjct: 32 MLRDAAADVVSSSTATRIHLFREILPPLLSRGSDSALFVAQLIRFI 77
>05_04_0452 - 21373876-21375531
Length = 551
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 371 GHTDQNRYT--LRIHVDEWTAAVTLASRL*RHIEESGADRIRRNQGAEVEGASRVGDSTQ 544
GH +R+T + TAA+ L ++ H+ SG D Q + +E +R GD
Sbjct: 113 GHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLAL 172
Query: 545 VYPVQD 562
+ V D
Sbjct: 173 AHKVFD 178
>01_06_0807 +
32125987-32126029,32126030-32126208,32126760-32126943,
32127714-32127788,32128079-32128188,32128747-32128965,
32129124-32129279,32129759-32129911,32130223-32130349,
32131598-32131728,32131858-32132139
Length = 552
Score = 28.7 bits (61), Expect = 5.3
Identities = 26/90 (28%), Positives = 37/90 (41%)
Frame = -3
Query: 712 LLRLHRPVVFTRYLQPIRVQSSADAFRNYDGLTVYASGHGRLWTNGATPEVLNWVYLRAV 533
LL L VVF+R L P+ +S+ R Y H +NG PE YLRA+
Sbjct: 20 LLLLLPHVVFSRPLFPLPSKSNGIEKRPLQTFRPYNIAHRG--SNGEIPEETAAAYLRAI 77
Query: 532 ANPTCALNFGTLITPNAICARFFNVTSQST 443
+ L + + F +VT +T
Sbjct: 78 EEGADFIETDILASKDGALICFHDVTLDAT 107
>05_07_0199 + 28365335-28365603,28367687-28368554
Length = 378
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 440 ASRL*RHIEESGADRIRRNQGAEVEGAS 523
A+++ + +E G DRIR + G +EGAS
Sbjct: 286 AAKILQWFKEEGQDRIRAHSGPRMEGAS 313
>04_04_1055 + 30444235-30446649
Length = 804
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -1
Query: 525 RLAPSTSAP*LRRMRSAPDSSM*RHSLLARVTAAV 421
RL S A LRR RS PD+++ R+SLL ++V
Sbjct: 122 RLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSV 156
>12_01_0863 - 8179535-8179774,8180301-8180364,8180505-8180896
Length = 231
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 470 SGADRIRRNQGAEVEGASRVG-DSTQVYPVQDLGSSTIRPETTMTAGIHG 616
SG + RR+ E AS G DST++ PV ++T+R G G
Sbjct: 8 SGGMQRRRSLWQAAEAASGAGGDSTRIRPVPSTRATTVRGSVDSDCGTGG 57
>01_06_0049 - 25953811-25954131,25954223-25954903
Length = 333
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 524 DLRPQLRHPDYAECDLRQILQCDVTVY 444
+LRP +RHP Y R +L DV Y
Sbjct: 287 ELRPVIRHPRYKTAVCRMVLAGDVCPY 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,050,181
Number of Sequences: 37544
Number of extensions: 407829
Number of successful extensions: 1210
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -