Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13d03r
(756 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical pr... 41 8e-04
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 39 0.004
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 38 0.010
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 35 0.054
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 33 0.17
AC199169-4|ABO33250.1| 275|Caenorhabditis elegans Hypothetical ... 32 0.38
Z83228-10|CAB05732.2| 585|Caenorhabditis elegans Hypothetical p... 30 1.5
Z83228-1|CAC70093.1| 568|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF110415-1|AAF21932.1| 568|Caenorhabditis elegans organic catio... 30 1.5
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 28 6.2
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 28 6.2
>Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical
protein F31D4.6 protein.
Length = 292
Score = 41.1 bits (92), Expect = 8e-04
Identities = 30/75 (40%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = -3
Query: 481 ICARFFNVTSQS---TCQGDSGGPLVHVDPQ-GVPILIGVTSFVAGGEFGCHSGFPAGFI 314
ICA NV++ S TC GDSGG L + D G LI +TSF G GC S A F
Sbjct: 219 ICATSMNVSNYSAPRTCHGDSGGGLEYRDDNYGRAFLIAITSF---GTRGCPSNMLARFT 275
Query: 313 RPGPFHDWFYRVSGV 269
R + + +GV
Sbjct: 276 RVDMYLNLICNYTGV 290
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 38.7 bits (86), Expect = 0.004
Identities = 44/169 (26%), Positives = 64/169 (37%), Gaps = 13/169 (7%)
Frame = -3
Query: 739 NLVQPNDISLLRLHRPVVFTRYLQPIRVQSSADAFRNYDGLTVYASGHGRLWTNGATPEV 560
N NDI+LLR+ + V + + Y V G + P++
Sbjct: 118 NQTADNDIALLRISSDLSKLGIKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDSSGEPKL 177
Query: 559 LNWVYLRAVANPT-----CALNFGTL------ITPNAICARFFNVTSQSTCQGDSGGPLV 413
+N L++ + P C + L IT ICA + T GDSGGPL+
Sbjct: 178 INSQTLQSTSVPIISDDDCVKTWRFLSLLSVKITGYQICAGAY---LHGTAPGDSGGPLL 234
Query: 412 HVDPQGVPILIGVTSFVAGGEFGC--HSGFPAGFIRPGPFHDWFYRVSG 272
G + IG+TS+ A G G FP + R + W V G
Sbjct: 235 IHKSNGEYVQIGITSYGADGLDGVIDQGKFPGVYTRISKYVPWIQGVIG 283
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 37.5 bits (83), Expect = 0.010
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 3/148 (2%)
Frame = -3
Query: 724 NDISLLRLHRP-VVFTRYLQPIRVQSSADAFRNYDGLTVYASGHGRLWTNGATPEVLNWV 548
+DI++L + P + F Y QPI + S + G SG G + A E L
Sbjct: 116 HDIAILEIPYPGIEFNEYAQPICLPSKDFVYT--PGRQCVVSGWGSMGLRYA--ERLQAA 171
Query: 547 YLRAVANPTC--ALNFGTLITPNAICARFFNVTSQSTCQGDSGGPLVHVDPQGVPILIGV 374
+ + C + + ++ +A CA + S CQGDSGGP G +L GV
Sbjct: 172 LIPIINRFDCVNSSQIYSSMSRSAFCAGYLEGGIDS-CQGDSGGPFACRREDGAFVLAGV 230
Query: 373 TSFVAGGEFGCHSGFPAGFIRPGPFHDW 290
S+ G+ P + P+ W
Sbjct: 231 ISW---GDGCAQKKQPGIYTMVAPYLSW 255
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 35.1 bits (77), Expect = 0.054
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Frame = -3
Query: 721 DISLLRLHRPVVFTRYLQPIRVQSSADAFRNYDGLTVYASGHGRLWTNGATPEVLNWVYL 542
D +++R+H PV + +PI + S A N L V + + + L +++
Sbjct: 145 DFAIMRIHPPVNTSTTARPICLPS-LPAVENR--LCVVTGWGSTIEGSSLSAPTLREIHV 201
Query: 541 RAVANPTCAL--NF-GTLITPNAICARFFNVTSQSTCQGDSGGPLV 413
++ C+ N+ G + P+ +CA + + +CQGDSGGPL+
Sbjct: 202 PLLSTLFCSSLPNYIGRIHLPSMLCAGY-SYGKIDSCQGDSGGPLM 246
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 33.5 bits (73), Expect = 0.17
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = -3
Query: 610 YASGHGRLWTNGATPEVLNWVYLRAVANPTCALNFGTLITPNAICARFFNVTSQSTCQGD 431
+ S G+ + N A P ++ + L TC N+GT I ++ C ++ C GD
Sbjct: 217 WGSDPGKGFDNAAFP-MIQVLTLATETLATCEENWGTSIPFDSFCTA--EEEDKNVCSGD 273
Query: 430 SGGPLV-HVDPQGVPILIGVTSF 365
SGG L H +I + S+
Sbjct: 274 SGGGLTFHQSDSAREFIIAIVSY 296
>AC199169-4|ABO33250.1| 275|Caenorhabditis elegans Hypothetical
protein F38A1.10 protein.
Length = 275
Score = 32.3 bits (70), Expect = 0.38
Identities = 23/100 (23%), Positives = 40/100 (40%)
Frame = -3
Query: 688 VFTRYLQPIRVQSSADAFRNYDGLTVYASGHGRLWTNGATPEVLNWVYLRAVANPTCALN 509
V + YL + Q +++ +Y T + S +G W + + +WV+ NP N
Sbjct: 54 VISSYLAYVPDQYTSNFLASY-ARTAFRSANGIFWIGLSRNNISSWVWDNG--NPVTYTN 110
Query: 508 FGTLITPNAICARFFNVTSQSTCQGDSGGPLVHVDPQGVP 389
FGT + N + N + + D + DP P
Sbjct: 111 FGTQLGQNYVAESSANSKWSTFGENDKNFFVCSYDPAAPP 150
>Z83228-10|CAB05732.2| 585|Caenorhabditis elegans Hypothetical
protein F52F12.1a protein.
Length = 585
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -3
Query: 403 PQGVPILIGVTSFVAGGEFGCHSGFPAGFIRPGPFHDWFYRVSGVDFENL 254
P G P L+ SF+ G+FG SGF +I G + R G+ ++
Sbjct: 437 PDGYPWLVASASFI--GKFGVGSGFAVIYIFAGELYPTVVRAIGMGMSSM 484
>Z83228-1|CAC70093.1| 568|Caenorhabditis elegans Hypothetical
protein F52F12.1b protein.
Length = 568
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -3
Query: 403 PQGVPILIGVTSFVAGGEFGCHSGFPAGFIRPGPFHDWFYRVSGVDFENL 254
P G P L+ SF+ G+FG SGF +I G + R G+ ++
Sbjct: 420 PDGYPWLVASASFI--GKFGVGSGFAVIYIFAGELYPTVVRAIGMGMSSM 467
>AF110415-1|AAF21932.1| 568|Caenorhabditis elegans organic cation
transporter 1 protein.
Length = 568
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -3
Query: 403 PQGVPILIGVTSFVAGGEFGCHSGFPAGFIRPGPFHDWFYRVSGVDFENL 254
P G P L+ SF+ G+FG SGF +I G + R G+ ++
Sbjct: 420 PDGYPWLVASASFI--GKFGVGSGFAVIYIFAGELYPTVVRAIGMGMSSM 467
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical protein
C34F6.1 protein.
Length = 1043
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 463 NVTSQSTCQGDSGGPLVHVDPQGVPILIGVTSFVAGGEFGCHSGF 329
N SQ+TC ++ + P G+P++ G T G + GC GF
Sbjct: 919 NFISQNTCM-EACPEYRNYCPHGIPLIEGSTVTSCGIDKGCPEGF 962
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 461 IEESGAD--RIRRNQGAEVEGASRVGDSTQVYPVQDLGSSTIRPETTMTAGIHGES 622
+E SG+D + + E+EG S GD +D+ ST +P + G +GE+
Sbjct: 1178 LEISGSDLTKATKKPHVEIEG-SGTGDEEITATTRDVSKSTKKPRVEVDGGDNGET 1232
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,394,509
Number of Sequences: 27780
Number of extensions: 318738
Number of successful extensions: 824
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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