Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d03f
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    28   1.3  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    28   1.7  
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    27   3.9  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    26   6.7  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.9  

>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 503 RTHRVCQRSWSSLDEWCYSRGPELG 577
           R   + + SW  +DEWC   G E+G
Sbjct: 628 RHDSIHELSWIDVDEWCIRGGSEIG 652


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 236 DDRATASKHSAGWIHHAEGGVVGVLTGSRLPTRYNTEICGIYIFVDIFNEV 84
           D   T S H   W H+++GG    LT   L  R + E+      +D+++++
Sbjct: 14  DSYTTDSSH-INWSHYSDGGFTLSLTSGLLQIRQHEELIQSINLLDLWHQL 63


>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 84  YFIEDINKDVDTTNLRIVSGWEATPGQHPHHAAL 185
           Y  ED++ D +    + ++G  A   + PHH+ L
Sbjct: 95  YNSEDLSNDTENNETKSINGKSALDLKEPHHSEL 128


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 87  FIEDINKDVDTTNLRIVSGWEATPGQH 167
           F++D+N+ +D + ++ V      PG H
Sbjct: 172 FLKDVNRSIDLSFIKYVGDAAGRPGDH 198


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 372 DDTRPNLVQPNDISLLRLHRPVVFTRYLQPIRVQSSAD 485
           D     LV PN+   + +H PVV T Y      +S A+
Sbjct: 132 DSPNMQLVVPNNFQQMFIHHPVVDTIYSPEESSESQAE 169


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +3

Query: 252 ITAAHCVAGRITVVIRAGVTNLTTPEYISESTEWYNYPTYDDTRPNLV 395
           +TA H + G       A VTN TT  +I+ ST   N  T   + PN V
Sbjct: 191 LTATHTITGGEDAATGAAVTN-TTTTHITTST---NTSTVIPSNPNSV 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,275,120
Number of Sequences: 5004
Number of extensions: 70226
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)