Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d03f
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    48   6e-06
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    36   0.031
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    33   0.17 
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    32   0.51 
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    29   3.6  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 41/123 (33%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
 Frame = +3

Query: 129 RIVSGWEATPGQHPHHAALRMVDPTGGVFACGGSIVHREWVITAAHCV-----AGRITVV 293
           R+V G+E  PG  P  AALR  +       CG SI+ +  +ITAAHC           VV
Sbjct: 26  RVVGGFETVPGAFPWTAALR--NKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEVV 83

Query: 294 IRAGVTNLTT-PEYISESTEWYNYPTYDDTRPNLVQPNDISLLRLHRP-VVFTRYLQPIR 467
           +     N T   E I      + YP Y D     +  +DI++L +  P + F  Y QPI 
Sbjct: 84  VGDWDNNQTDGNEQIFYLQRIHFYPLYKD-----IFSHDIAILEIPYPGIEFNEYAQPIC 138

Query: 468 VQS 476
           + S
Sbjct: 139 LPS 141


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = +3

Query: 108 DVDTTNLRIVSGWEATPGQHPHHAALRMVDPTGGVFACGGSIVHREWVITAAHCVA 275
           D  T + R++ G E++P   P    ++++   G    CGGS++   +V+TAAHC A
Sbjct: 50  DYVTLDHRLIGGSESSPHSWPW--TVQLLSRLGH-HRCGGSLIDPNFVLTAAHCFA 102


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 3/163 (1%)
 Frame = +3

Query: 123 NLRIVSGWEATPGQHPHHAALRMVDPTGGVFACGGSIVHREWVITAAHC---VAGRITVV 293
           + RI+ G     G +   A L      G    CG +++   W++TAAHC   +  R  V 
Sbjct: 35  SFRIIGGNSIDDGAN-WMAKLVSYGDNGQGILCGATVIDDFWLVTAAHCALQLQTRSFVY 93

Query: 294 IRAGVTNLTTPEYISESTEWYNYPTYDDTRPNLVQPNDISLLRLHRPVVFTRYLQPIRVQ 473
           +R    N      + E+   Y +  Y+    N    NDI+LLR+   +          V 
Sbjct: 94  VREPKNNRERSFSVKEA---YIHSGYN----NQTADNDIALLRISSDLSKLGIKPVCLVH 146

Query: 474 SSADAFRNYDGLTVYASGHGRLWTNGATPEVLNWVYLRAVANP 602
             +   + Y    V   G      +   P+++N   L++ + P
Sbjct: 147 DDSKLLKQYKNGVVIGYGLTLGEDSSGEPKLINSQTLQSTSVP 189


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +3

Query: 132 IVSGWEATPGQHPHHAALRMVDPTGGVFACGGSIVHREWVITAAHCVAGRITVVIRAGVT 311
           I++G+ A        A++    P G    CGG ++    VIT+AHCV       + A VT
Sbjct: 17  IINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHCVFSGDDFAVTAKVT 76


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 219 CGGSIVHREWVITAAHCVAGRITVVIRAGVTNLTTPEYISESTEWYN 359
           CGG+++  + V+TAAHC           G  N  +  Y  ES   YN
Sbjct: 62  CGGTLITLKHVLTAAHCFQKHFGAKKEGGEENSMSGRY-CESWVIYN 107


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 665  IEESGAD--RIRRNQGAEVEGASRVGDSTQVYPVQDLGSSTIRPETTMTAGIHGES 504
            +E SG+D  +  +    E+EG S  GD       +D+  ST +P   +  G +GE+
Sbjct: 1178 LEISGSDLTKATKKPHVEIEG-SGTGDEEITATTRDVSKSTKKPRVEVDGGDNGET 1232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,542,553
Number of Sequences: 27780
Number of extensions: 420429
Number of successful extensions: 1305
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)