Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d03f
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    54   1e-09
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    28   0.082
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.1  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 54.4 bits (125), Expect = 1e-09
 Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 9/184 (4%)
 Frame = +3

Query: 129 RIVSGWEATPGQHPHHAALRMVDPTGGVFACGGSIVHREWVITAAHCVAGRITVVIRAGV 308
           RIV G      + P  A ++     G +  CG +I+ + +V+TAAHC+    T  +   V
Sbjct: 160 RIVGGTNTGINEFPMMAGIKRTYEPGMI--CGATIISKRYVLTAAHCIIDENTTKLAIVV 217

Query: 309 -------TNLTTPEYISESTEWYNYPTYDDTRPNLVQPNDISLLRLHRPVVFTRYLQP-- 461
                     T    +    +   +P YD    +  Q NDI+LL+  + + F   + P  
Sbjct: 218 GEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPAC 277

Query: 462 IRVQSSADAFRNYDGLTVYASGHGRLWTNGATPEVLNWVYLRAVANPTCALNFGTLITPN 641
           +  Q   D+F   D +TV   GH     NG    +L    L  +    C   +G ++  N
Sbjct: 278 LPFQHFLDSFAGSD-VTVLGWGHTSF--NGMLSHILQKTTLNMLTQVECYKYYGNIMV-N 333

Query: 642 AICA 653
           A+CA
Sbjct: 334 AMCA 337


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 0.082
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -3

Query: 134 NTEICGIYIFVDIFNEVGLDFLGKALPTKHK 42
           N E+CGIY   +   ++ ++F+   +P +H+
Sbjct: 88  NEEVCGIYFLAEPDQKIEINFITFDIPCEHR 118


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 509 HRVCQRSWSSLDEWCYSR 562
           H+ C R W  +   C SR
Sbjct: 18  HQRCSRDWFRISAGCVSR 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,666
Number of Sequences: 438
Number of extensions: 5149
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)