Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13c20f
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    43   4e-05
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    30   0.20 
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    30   0.20 
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    26   3.3  
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    26   3.3  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    26   4.4  
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    25   5.8  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    25   5.8  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    25   5.8  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    25   7.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   7.6  

>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 39/122 (31%), Positives = 55/122 (45%)
 Frame = +3

Query: 168 GVVKAPMTRLRRRLSVEADEVKSPVATPTKKRGGRLATKPQLDLIDENATENVPKRQTRK 347
           G++ A + R      VE DE +      T+K+  +   KP+ + I     E  PK    K
Sbjct: 149 GLIIASVKRKVSFSDVEEDEFEPE---NTRKKLQKPIEKPKKEKI-----EATPKIDGGK 200

Query: 348 TKAKEIVEAEVSEEKTLTPSRRSARIRSNTSLILETTQTIDSPRAKRAVRRTSQVGSDSE 527
               E   AE+S+     PSRRSAR+R  T    ++   I SP+ K A +R    GS  E
Sbjct: 201 RLKNEKSSAEISQTSKQRPSRRSARVRMATDNAQKSPSPIPSPK-KTAKKRVRFAGSLEE 259

Query: 528 AP 533
            P
Sbjct: 260 LP 261


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 5/123 (4%)
 Frame = +3

Query: 144 NFQTMDDEGVVKAPMTRLRRRLSVEADEVKSPVATPTKKRGGRLATKPQLDLIDENATEN 323
           + Q   D G V      +  +L +     K    +   +  GRL    + DL+D++   +
Sbjct: 60  SIQVNTDNGKVAVQSNGVSTKLRMAKYHSKYSALSSVFRYAGRLCGTFEEDLVDKSLDSS 119

Query: 324 V-----PKRQTRKTKAKEIVEAEVSEEKTLTPSRRSARIRSNTSLILETTQTIDSPRAKR 488
           V      K + RKT  KE  + E S++K     ++    + +  L L+ + T    + KR
Sbjct: 120 VSPVSSKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSHT---QKRKR 176

Query: 489 AVR 497
            VR
Sbjct: 177 KVR 179


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
 Frame = +3

Query: 192 RLRRRLSVEADEVKSP-VATPTKKRGGRLATKPQLDLIDENATENVPKRQTRKTKAKEIV 368
           R RR +S+ A  + SP V+ P     G L   PQ  L + +      + +T  T     +
Sbjct: 306 RPRRSVSL-ATGLNSPSVSKPPSSATGPLYHSPQSSLTNSSVASADVQERTHNTNGASPI 364

Query: 369 EAEVSE--EKTLTPSRRSARIRSNTSLILETTQTIDSPRAK 485
           + ++SE  ++   PS   A   ++T  IL+T  T  S  AK
Sbjct: 365 QDQISEFTDQHQNPSNNDA---ASTQSILKTAPTQLSASAK 402


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 16/67 (23%), Positives = 26/67 (38%)
 Frame = +3

Query: 276 ATKPQLDLIDENATENVPKRQTRKTKAKEIVEAEVSEEKTLTPSRRSARIRSNTSLILET 455
           +TKP  DL      + +   +TR          ++ E+    P R+  R    TS +   
Sbjct: 206 STKPSEDLSSPTKKDLIDFSETRPLAQASRATPDIKEQHAKKPKRKHTRSTVPTSNVEPV 265

Query: 456 TQTIDSP 476
           +Q   SP
Sbjct: 266 SQPQPSP 272


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 22/97 (22%), Positives = 40/97 (41%)
 Frame = +3

Query: 150 QTMDDEGVVKAPMTRLRRRLSVEADEVKSPVATPTKKRGGRLATKPQLDLIDENATENVP 329
           + + D   +KA     R R    A+E +   + P KK       + +++  DE+AT   P
Sbjct: 100 EKVPDAPPIKAERKTKRPRARRAANEGEHNESVPAKKVKKNTVKEEEIEKDDESATTETP 159

Query: 330 KRQTRKTKAKEIVEAEVSEEKTLTPSRRSARIRSNTS 440
               ++    E  EA+  E+ ++     S +  S  S
Sbjct: 160 ---VKEEPTGEETEADHEEKASVDHGNFSDKTTSEAS 193


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 285 PQLDLIDENATENVPKRQTRKTKAKEIVEAEVSEEKTL 398
           P+L+ ++   TE   K QT+ T+    VE   S E+ L
Sbjct: 412 PKLEHLERIVTEYFEKEQTKDTRIMIFVEIRSSAEEIL 449


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 403 GVNVFSSETSASTISLALVLR 341
           GVN   +ETSA T+S+ L +R
Sbjct: 246 GVNALGAETSALTVSVVLNVR 266


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = -1

Query: 553 VCLAGVNGASLSLPTWEVRLTALLALGESIVCVVSRIRLVFERILALRLDGVNVFSSETS 374
           +  A V GA    P   VRL AL AL +S+  V       +ER   +++      S E S
Sbjct: 173 ILTAVVAGARKEEPDAAVRLAALGALYDSLEFVRENFNNEYERNYIMQVVCEATQSPEAS 232

Query: 373 ASTISLALVLRV 338
             T +   ++++
Sbjct: 233 IQTAAFGCLVKI 244


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 250 GVATGDFTSSASTDNLLLSRVIGALTTPSSSMV 152
           GVA   +TS  S  +  LSR IG    P SS+V
Sbjct: 141 GVANEKYTSEGSIQDFSLSR-IGLSNNPISSLV 172


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/68 (19%), Positives = 29/68 (42%)
 Frame = +3

Query: 216 EADEVKSPVATPTKKRGGRLATKPQLDLIDENATENVPKRQTRKTKAKEIVEAEVSEEKT 395
           E+D+++S   TP            +++   E  T++V   +  +T+     E+  + +  
Sbjct: 294 ESDDMRSLFGTPASSSSYDALFDEEVEKAIEEETKSVQANEENETEKPSQTESTTNNDNI 353

Query: 396 LTPSRRSA 419
             PS  S+
Sbjct: 354 KAPSESSS 361


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +3

Query: 192 RLRRRLSVEADEVK-SPVATPTKKRGGRLATKPQLDLIDENATENVPKRQTRKTKAKEIV 368
           RL + +   +++V+ +PV  P   R      KP +  +  + T+   K +         +
Sbjct: 133 RLPKNIIKSSEDVQIAPVTPPVHSRSFDPLPKPPVPSVPVSKTKRRTKHKLAPVVEVPEI 192

Query: 369 EAEVSEEKTLTPSRRSARIRS 431
             EVS + T T   +  R+RS
Sbjct: 193 TNEVSPKFTSTNDEQVYRLRS 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,620
Number of Sequences: 5004
Number of extensions: 32349
Number of successful extensions: 109
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)