Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13c20f
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.1  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.1  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   3.7  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    22   4.9  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   6.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.5  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   8.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 168 GVVKAPMTRLRRRLSVEADEVKSPV 242
           G+V  P   +RRR+ +++   KS +
Sbjct: 227 GIVSYPFDTVRRRMMMQSGRAKSEI 251


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 168 GVVKAPMTRLRRRLSVEADEVKSPV 242
           G+V  P   +RRR+ +++   KS +
Sbjct: 227 GIVSYPFDTVRRRMMMQSGRAKSEI 251


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/40 (20%), Positives = 22/40 (55%)
 Frame = +3

Query: 393 TLTPSRRSARIRSNTSLILETTQTIDSPRAKRAVRRTSQV 512
           T+ P+R+   +  +T+++    QT+ S   +  +  +S++
Sbjct: 94  TIPPTRKLPPLHPHTAMVTHLPQTLTSENVEILLEHSSKL 133


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 336 QTRKTKAKEIVEAEVSE 386
           Q R+ KAK + EAE+ +
Sbjct: 58  QNRRAKAKRLQEAEIEK 74


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 100 CTCI*CVLNKSYLNKIFKPWMMKALLK 180
           C CI    N    N +FKP  +KA+++
Sbjct: 63  CECILKNFNILDKNNVFKPQGIKAVME 89


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -1

Query: 142 YLNSFYLKHTKYTCKKYNRYSKSCF 68
           Y  S Y  +  Y    YN Y+K  +
Sbjct: 322 YKYSNYNNYNNYNNNNYNNYNKKLY 346


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 207 LSVEADEVKSPVATPTKKRGGRLATKPQ 290
           +S+  D V++ +     K   RLA KP+
Sbjct: 189 ISISPDLVETDMTAQWLKENSRLALKPK 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,223
Number of Sequences: 438
Number of extensions: 2056
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)