Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13c19r
         (463 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66358-1|AAC47472.1|  149|Drosophila melanogaster RpL27a protein.     123   1e-28
U66357-1|AAC47475.1|  149|Drosophila melanogaster ribosomal prot...   123   1e-28
AY071144-1|AAL48766.1|  149|Drosophila melanogaster RE17991p pro...   123   1e-28
AE014134-746|AAF51006.3|  149|Drosophila melanogaster CG15442-PA...   123   1e-28
X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal prot...   121   4e-28
D10228-1|BAA01080.1|  761|Drosophila melanogaster Ets domain pro...    29   2.3  
J03138-1|AAA28724.1| 1095|Drosophila melanogaster protein ( D.me...    29   3.0  
BT003293-1|AAO25053.1| 1095|Drosophila melanogaster GH28834p pro...    29   3.0  
AF181641-1|AAD55427.1| 1095|Drosophila melanogaster norpA protein.     29   3.0  
AE014298-627|AAN09121.1| 1095|Drosophila melanogaster CG3620-PB,...    29   3.0  
AE014298-626|AAF45942.2| 1095|Drosophila melanogaster CG3620-PA,...    29   3.0  
AE014298-625|AAX52475.1| 1095|Drosophila melanogaster CG3620-PD,...    29   3.0  
AE014298-624|AAX52474.1| 1095|Drosophila melanogaster CG3620-PC,...    29   3.0  
EF058032-1|ABL84967.1|  796|Drosophila melanogaster Nup153 protein.    28   7.0  
EF058031-1|ABL84966.1|  796|Drosophila melanogaster Nup153 protein.    28   7.0  
X67704-1|CAA47941.1|  334|Drosophila melanogaster sperm protein ...    27   9.3  
AY060667-1|AAL28215.1|  334|Drosophila melanogaster GH09231p pro...    27   9.3  
AE014297-4221|AAF56779.1|  334|Drosophila melanogaster CG11719-P...    27   9.3  

>U66358-1|AAC47472.1|  149|Drosophila melanogaster RpL27a protein.
          Length = 149

 Score =  123 bits (297), Expect = 1e-28
 Identities = 61/120 (50%), Positives = 71/120 (59%)
 Frame = -2

Query: 420 KKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 241
           +KKTRKLRGHVS                GNAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 240 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQPVIV 61
           +   F P +NLDKLW+LV  +   +       K PVI++VK           LP +PVIV
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125


>U66357-1|AAC47475.1|  149|Drosophila melanogaster ribosomal protein
           RpL27a protein.
          Length = 149

 Score =  123 bits (297), Expect = 1e-28
 Identities = 61/120 (50%), Positives = 71/120 (59%)
 Frame = -2

Query: 420 KKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 241
           +KKTRKLRGHVS                GNAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 240 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQPVIV 61
           +   F P +NLDKLW+LV  +   +       K PVI++VK           LP +PVIV
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125


>AY071144-1|AAL48766.1|  149|Drosophila melanogaster RE17991p
           protein.
          Length = 149

 Score =  123 bits (297), Expect = 1e-28
 Identities = 61/120 (50%), Positives = 71/120 (59%)
 Frame = -2

Query: 420 KKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 241
           +KKTRKLRGHVS                GNAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 240 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQPVIV 61
           +   F P +NLDKLW+LV  +   +       K PVI++VK           LP +PVIV
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125


>AE014134-746|AAF51006.3|  149|Drosophila melanogaster CG15442-PA
           protein.
          Length = 149

 Score =  123 bits (297), Expect = 1e-28
 Identities = 61/120 (50%), Positives = 71/120 (59%)
 Frame = -2

Query: 420 KKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 241
           +KKTRKLRGHVS                GNAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 240 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQPVIV 61
           +   F P +NLDKLW+LV  +   +       K PVI++VK           LP +PVIV
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125


>X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal protein
           L27a protein.
          Length = 149

 Score =  121 bits (292), Expect = 4e-28
 Identities = 60/120 (50%), Positives = 70/120 (58%)
 Frame = -2

Query: 420 KKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 241
           +KKTRKLRGHVS                GN GG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNLGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 240 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQPVIV 61
           +   F P +NLDKLW+LV  +   +       K PVI++VK           LP +PVIV
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125


>D10228-1|BAA01080.1|  761|Drosophila melanogaster Ets domain
           protein protein.
          Length = 761

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 136 RHQYCQSWILQVARQRQTPQTTCHSKSKVLLKIS 35
           RH  C+   + +A  R+TP  TC S+ + +L+ S
Sbjct: 710 RHSQCRWKAIAMAASRRTPSDTCSSRRRSVLRQS 743


>J03138-1|AAA28724.1| 1095|Drosophila melanogaster protein (
           D.melanogaster phospholipaseC (norpA) mRNA, complete
           cds. ).
          Length = 1095

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -2

Query: 249 HFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK 118
           H  +  N CP +NL K W       RL Y     GK+PV  + K
Sbjct: 140 HNNRATNVCPRVNLMKHW------MRLSYCVEKSGKIPVKTLAK 177


>BT003293-1|AAO25053.1| 1095|Drosophila melanogaster GH28834p
           protein.
          Length = 1095

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -2

Query: 249 HFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK 118
           H  +  N CP +NL K W       RL Y     GK+PV  + K
Sbjct: 140 HNNRATNVCPRVNLMKHW------MRLSYCVEKSGKIPVKTLAK 177


>AF181641-1|AAD55427.1| 1095|Drosophila melanogaster norpA protein.
          Length = 1095

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -2

Query: 249 HFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK 118
           H  +  N CP +NL K W       RL Y     GK+PV  + K
Sbjct: 140 HNNRATNVCPRVNLMKHW------MRLSYCVEKSGKIPVKTLAK 177


>AE014298-627|AAN09121.1| 1095|Drosophila melanogaster CG3620-PB,
           isoform B protein.
          Length = 1095

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -2

Query: 249 HFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK 118
           H  +  N CP +NL K W       RL Y     GK+PV  + K
Sbjct: 140 HNNRATNVCPRVNLMKHW------MRLSYCVEKSGKIPVKTLAK 177


>AE014298-626|AAF45942.2| 1095|Drosophila melanogaster CG3620-PA,
           isoform A protein.
          Length = 1095

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -2

Query: 249 HFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK 118
           H  +  N CP +NL K W       RL Y     GK+PV  + K
Sbjct: 140 HNNRATNVCPRVNLMKHW------MRLSYCVEKSGKIPVKTLAK 177


>AE014298-625|AAX52475.1| 1095|Drosophila melanogaster CG3620-PD,
           isoform D protein.
          Length = 1095

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 264 GMRNF-HFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK 118
           G+R   H  K  N CP++ L K W       RL Y     GK+PV  + K
Sbjct: 134 GIRKITHNVKANNICPMMCLRKHW------MRLSYCVEKSGKIPVKTLAK 177


>AE014298-624|AAX52474.1| 1095|Drosophila melanogaster CG3620-PC,
           isoform C protein.
          Length = 1095

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 264 GMRNF-HFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK 118
           G+R   H  K  N CP++ L K W       RL Y     GK+PV  + K
Sbjct: 134 GIRKITHNVKANNICPMMCLRKHW------MRLSYCVEKSGKIPVKTLAK 177


>EF058032-1|ABL84967.1|  796|Drosophila melanogaster Nup153 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 327 GGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKN 229
           GG+     +M++YH    G  G+R  H+  N N
Sbjct: 410 GGDSQSESDMNEYHDNGEGHDGLRPSHYNSNSN 442


>EF058031-1|ABL84966.1|  796|Drosophila melanogaster Nup153 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 327 GGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKN 229
           GG+     +M++YH    G  G+R  H+  N N
Sbjct: 410 GGDSQSESDMNEYHDNGEGHDGLRPSHYNSNSN 442


>X67704-1|CAA47941.1|  334|Drosophila melanogaster sperm protein
           protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 317 CSPPALPRPPGCLRCFPIRPCP 382
           CSPP     P C  C+P  P P
Sbjct: 290 CSPPCPYESPECGPCYPCAPTP 311


>AY060667-1|AAL28215.1|  334|Drosophila melanogaster GH09231p
           protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 317 CSPPALPRPPGCLRCFPIRPCP 382
           CSPP     P C  C+P  P P
Sbjct: 290 CSPPCPYESPECGPCYPCAPTP 311


>AE014297-4221|AAF56779.1|  334|Drosophila melanogaster CG11719-PA
           protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 317 CSPPALPRPPGCLRCFPIRPCP 382
           CSPP     P C  C+P  P P
Sbjct: 290 CSPPCPYESPECGPCYPCAPTP 311


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,599,190
Number of Sequences: 53049
Number of extensions: 415173
Number of successful extensions: 1621
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1539014778
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)