Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13c19r
(463 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-7|AAK27870.1| 145|Caenorhabditis elegans Hypothetical ... 124 3e-29
AC087079-8|AAK27871.1| 88|Caenorhabditis elegans Hypothetical ... 54 4e-08
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z75550-7|CAA99925.2| 195|Caenorhabditis elegans Hypothetical pr... 28 2.8
AF067219-10|AAC17031.1| 753|Caenorhabditis elegans Hypothetical... 28 3.7
AF003133-2|AAB54136.1| 753|Caenorhabditis elegans Hypothetical ... 28 3.7
AC024817-17|AAU87811.1| 178|Caenorhabditis elegans C-type lecti... 28 3.7
U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily as... 27 6.5
U41995-1|AAA83459.1| 301|Caenorhabditis elegans Serpentine rece... 27 6.5
U39472-5|AAK31393.1| 128|Caenorhabditis elegans Hypothetical pr... 27 6.5
U28735-3|AAF99958.3| 467|Caenorhabditis elegans Glycosylation r... 27 8.6
U28735-2|AAM69111.1| 543|Caenorhabditis elegans Glycosylation r... 27 8.6
AF082011-1|AAD03023.1| 467|Caenorhabditis elegans UDP-N-acetylg... 27 8.6
>AC087079-7|AAK27870.1| 145|Caenorhabditis elegans Hypothetical
protein Y37E3.8a protein.
Length = 145
Score = 124 bits (299), Expect = 3e-29
Identities = 61/124 (49%), Positives = 78/124 (62%)
Frame = -2
Query: 432 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 253
MA + +KTRKLRGHVS GNAGG+HHHRIN DKYHPGYFGK+GMR
Sbjct: 1 MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60
Query: 252 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQ 73
FH KN+++CP +N+++LW+LV ++ R K A GK PVI+ K LP+
Sbjct: 61 FHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPET 117
Query: 72 PVIV 61
P+IV
Sbjct: 118 PLIV 121
>AC087079-8|AAK27871.1| 88|Caenorhabditis elegans Hypothetical
protein Y37E3.8b protein.
Length = 88
Score = 54.4 bits (125), Expect = 4e-08
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = -2
Query: 261 MRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXL 82
MR FH KN+++CP +N+++LW+LV ++ R K A GK PVI+ K L
Sbjct: 1 MRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLL 57
Query: 81 PKQPVIV 61
P+ P+IV
Sbjct: 58 PETPLIV 64
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 28.3 bits (60), Expect = 2.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 326 PALPRPPGCLRCFPIRPCP 382
PA P+ P C C P +PCP
Sbjct: 50 PACPQAPSCPVCPPPQPCP 68
>Z75550-7|CAA99925.2| 195|Caenorhabditis elegans Hypothetical
protein T22C1.9 protein.
Length = 195
Score = 28.3 bits (60), Expect = 2.8
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Frame = -2
Query: 429 ATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMD-----KYHPGYFGKL 265
+T KK+ K GH N GG H + M+ ++ P F KL
Sbjct: 127 STKSKKSEKDVGHDDHKKEDVHGDQKDDNKDRNDGGRDSHVVQMEHNSEEEHEPSGFKKL 186
Query: 264 GMRNFHFRK 238
G F+F+K
Sbjct: 187 GKSFFNFKK 195
>AF067219-10|AAC17031.1| 753|Caenorhabditis elegans Hypothetical
protein R12E2.10 protein.
Length = 753
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 172 AEVCICSRWQGPRHQYCQSWILQVARQRQ 86
AE+ ICS +GP ++Y +Q RQR+
Sbjct: 613 AEIAICSLLRGPTYKYPVQRAVQFLRQRR 641
>AF003133-2|AAB54136.1| 753|Caenorhabditis elegans Hypothetical
protein T21E3.1 protein.
Length = 753
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 172 AEVCICSRWQGPRHQYCQSWILQVARQRQ 86
AE+ ICS +GP ++Y +Q RQR+
Sbjct: 613 AEIAICSLLRGPTYKYPVQRAVQFLRQRR 641
>AC024817-17|AAU87811.1| 178|Caenorhabditis elegans C-type lectin
protein 80 protein.
Length = 178
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/51 (21%), Positives = 26/51 (50%)
Frame = -2
Query: 267 LGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 115
LG NF+++ ++++ + WT + +T LK+ + +P N+ +
Sbjct: 105 LGWTNFNYQNSQDYVAESVTNAKWTAYNSETELKFVCSYYPLMPTTNLASS 155
>U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily
assigned gene nameprotein 224 protein.
Length = 465
Score = 27.1 bits (57), Expect = 6.5
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Frame = -2
Query: 327 GGEHHHRINMDKYHPGYF-----GKLGMRN-FHFRKNKNFCPVLNLDKLW 196
G E HH D YHP F +L + N + F KNK +C D+L+
Sbjct: 285 GVECHHHSTTDTYHPNCFRCETCRQLLVDNIYFFYKNKYYCGRHYADQLY 334
>U41995-1|AAA83459.1| 301|Caenorhabditis elegans Serpentine
receptor, class x protein47 protein.
Length = 301
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 211 VQNWTEILVLSKVEISHTKFAKVSR 285
+ NWT L LSKV H F ++R
Sbjct: 20 IANWTVFLFLSKVPSIHKSFGSLTR 44
>U39472-5|AAK31393.1| 128|Caenorhabditis elegans Hypothetical
protein B0304.4 protein.
Length = 128
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +1
Query: 115 SFDNIDDGDLA-IWSRCILQPRLF 183
S N+ G L IWSRCI QP F
Sbjct: 14 SSGNVQKGKLLNIWSRCIAQPSSF 37
>U28735-3|AAF99958.3| 467|Caenorhabditis elegans Glycosylation
related protein 12,isoform a protein.
Length = 467
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +3
Query: 330 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 428
HY LD A+ FRYDHV D D+ S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187
>U28735-2|AAM69111.1| 543|Caenorhabditis elegans Glycosylation
related protein 12,isoform b protein.
Length = 543
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +3
Query: 330 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 428
HY LD A+ FRYDHV D D+ S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187
>AF082011-1|AAD03023.1| 467|Caenorhabditis elegans
UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
2-N-acetylglucosaminyltransferase I protein.
Length = 467
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +3
Query: 330 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 428
HY LD A+ FRYDHV D D+ S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,425,538
Number of Sequences: 27780
Number of extensions: 208393
Number of successful extensions: 520
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -