Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13c15r
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       27   0.24 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.1  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 17  VFSIKTLEHPNV--YLDCVLYVSFPLMKSELRISL 115
           VF ++T  HPNV  Y  CV + +FP    E+  SL
Sbjct: 174 VFHLET--HPNVTWYSQCVTFNAFPTYTHEITYSL 206


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 359 LPNRRLRKSQSKVQLGIDSIFDGPLQSQN*RKDV 460
           L + R  + +SKVQ  +D+++   L   N +KDV
Sbjct: 318 LTSERGYEQESKVQFVVDAVYAFALALHNLQKDV 351


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 359 LPNRRLRKSQSKVQLGIDSIFDGPLQSQN*RKDV 460
           L + R  + +SKVQ  +D+++   L   N +KDV
Sbjct: 408 LTSERGYEQESKVQFVVDAVYAFALALHNLQKDV 441


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 465 ELCDRISIGVSFLLNNFHKVLQGISARPVYDYCSSQVAEDV 587
           ++CDR+ +  S L+NN   V        V+D  +SQ+ + V
Sbjct: 128 DMCDRLWVLDSGLINNVRSVCP--PQLLVFDLNTSQLLKQV 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,556
Number of Sequences: 438
Number of extensions: 3718
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)