Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13c15f
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 119 4e-28
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 29 0.37
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 29 0.65
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 29 0.65
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 27 1.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 1.5
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 4.6
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 4.6
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 26 4.6
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 25 6.1
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 25 8.1
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar... 25 8.1
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 8.1
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 119 bits (286), Expect = 4e-28
Identities = 61/156 (39%), Positives = 97/156 (62%), Gaps = 3/156 (1%)
Frame = +3
Query: 117 KFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML- 293
K+DL+ KI Q+LDRHL+FPLLEFL+ ++T+D ELLQAK ++L TNM DYV ++ L
Sbjct: 14 KYDLSQKIMQHLDRHLIFPLLEFLSLRQTHDPKELLQAKYDLLKDTNMTDYVANLWTNLH 73
Query: 294 --YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLS 467
+ +ED ++R VL EL EL++ V+ +L +++ D++ + +D + HL
Sbjct: 74 GGHTDEDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALR--QDKGQNLQHL- 130
Query: 468 TNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLY 575
+ Y E I +Y+ A+++Y CGNY ++ LY
Sbjct: 131 -QEHYNITPERIAVLYKFAQFQYNCGNYGGASDLLY 165
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 29.5 bits (63), Expect = 0.37
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 420 TIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNY 551
T+ T+ D ++ HL+ +F + ++M++ ++YRY N+
Sbjct: 180 TVATLGDLIGMVGHLNDTSGVDFNLNEYNAMWKTSEYRYVDFNF 223
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 28.7 bits (61), Expect = 0.65
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 132 FKIGQYLDRHLVFPLLEF-LAAKETYDQSELLQAKLEILSK 251
F I +YL +L+ P LEF L A E Q + A ++ SK
Sbjct: 1218 FHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSK 1258
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 28.7 bits (61), Expect = 0.65
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = -1
Query: 542 TFIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRIPH-----GFNCFHYIISLHESQYW 381
TF+ +G I+ D +N L +VY ++ + F+ + ++S+++SQ W
Sbjct: 83 TFLVKYGDLINIQDPYNLNKTLFSVSDLVYNGIQLDYDSYSISFDAKYVLVSVNKSQRW 141
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 231 KLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDD 410
K+ + S N I Y + +L P+E ++ RG+ + Q +++ E VL+
Sbjct: 188 KITLNSVVNSISYSSFFEELLITSYAKPKEALRTRGLAIVWNQRWKNSPESVLKARSEIT 247
Query: 411 VMK 419
V K
Sbjct: 248 VCK 250
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +3
Query: 405 DDVMKTIETMRDPKTLINHLSTNKE---YEFKIEMIDSMYRLAK 527
+DV+K + T+ PK +I L ++ +EF I+ ID ++ +K
Sbjct: 3764 NDVLKKLITILSPKVIITKLDFERDTFVHEFGIDSIDLIWLASK 3807
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 539 FIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRIP 435
F IFGQ I AID ++ KL + + +SF P
Sbjct: 351 FFGIFGQKIDAIDFYSAKLYKISQQIENARSFDYP 385
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +3
Query: 378 EPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIE 497
+PV+R+ + I + + P+ L H S K+Y++ ++
Sbjct: 1947 KPVIRISHFHHTFEVISSKQRPRRLTIHGSDGKDYQYVLK 1986
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 270 VTDIRRMLYPEEDTPEEIIQRRGVVLSELQ-ELQDAVEPVL 389
VTDI+ +L + DTP ++ G + L+ +EP+L
Sbjct: 533 VTDIKEILPSQHDTPHNSVKLTGSSTTPASVSLRQMIEPLL 573
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 195 KETYDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEII 326
++ YD SE+L ++E+ S Y + P E T E ++
Sbjct: 163 QKLYDSSEVLDDRIELFSALTCRKYNISDEDLANPSELTQEPVV 206
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 414 MKTIETMRDPKTLINHLSTNKEYEFKIEMID 506
MKTIE P L + +K Y +E ID
Sbjct: 64 MKTIERAHFPSKLWQRIKLSKNYAKALEQID 94
>SPAC24C9.09 |||mitochondrial threonine-tRNA
ligase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = -1
Query: 446 FRIPHGFNCFHYIISLHESQYWLYC---ILKFLQFRKNY--TSPLYNFFRSVFFRIEHSS 282
F +PHG ++ ++ +QY ++ I+ L F+K+ S + + FR+E S
Sbjct: 69 FFLPHGTRIYNRLVDFLRAQYQIHGFEEIITPLIFKKDLWEKSGHWQNYEKEIFRVEESR 128
Query: 281 DVSN 270
+V +
Sbjct: 129 NVED 132
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 335 SPLYNFFRSVFFRIEHSSDVSNIIYH 258
S L N+F+ + EHS D ++ + H
Sbjct: 990 SKLVNYFKRIHGTNEHSKDTADFVLH 1015
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,017
Number of Sequences: 5004
Number of extensions: 43615
Number of successful extensions: 130
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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