Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13c14r
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.5  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   8.2  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 376 SLTLMNAQRHPLTPRNN*TNTRKSFLRFRQ 465
           S++L +  R P TPR N T  ++   R+++
Sbjct: 132 SVSLSSPPREPGTPRINFTKLKRHHPRYKR 161



 Score = 22.2 bits (45), Expect = 4.7
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +3

Query: 177 SKRTSLSSTNTGLVSAVTGSQIVGIRSVDFGVGFPNLTKLVHRVVIRSTINCSSSVLSEP 356
           +K  S  S N  L +  TG+      S  FG+    L K+  R  IR     ++S  +  
Sbjct: 462 TKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWS 521

Query: 357 PA 362
           PA
Sbjct: 522 PA 523


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -3

Query: 637 LKSNFNLDEAQIEKAAKNVRHFYIGDSSLSAEVASELQDFESDFVYNHPSQ 485
           LK   ++   Q+EK AKN+R   +   +++ E+   ++    +F  +H  Q
Sbjct: 18  LKPVKSMSADQVEKLAKNMRKSCLQKIAITEELVDGMR--RGEFPDDHDLQ 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,261
Number of Sequences: 438
Number of extensions: 4541
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)