Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13c14f
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    38   8e-04
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    30   0.27 
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    29   0.36 
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    28   1.1  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    26   4.4  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.9  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   7.7  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 38.3 bits (85), Expect = 8e-04
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
 Frame = +1

Query: 328 NCLRLNIYVPSAASSRNPMPVLVWIHGGDFATGSASDY---GVKNIVRHG----VLVVTM 486
           +CL LNI+VP+        PVL +IHGG    G+   Y     +++   G     ++V+ 
Sbjct: 81  DCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLHYRQCDPQDLQADGSPAKFILVSP 140

Query: 487 NYRLGPYGFLC----LDVPTASGNQGLRDQ 564
            +RL  +GFL     L+    S N G  DQ
Sbjct: 141 GHRLNLFGFLAGKELLEEDPKSSNFGFWDQ 170


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 232 ATDPIAFPEIIHDAVDEVRCPQTSSSVGEQTLNCLRLNIYVPSAASSRNPMPVL 393
           ATDP  F   +H+ +  V C   S       L C   +I++ S +++  P P++
Sbjct: 335 ATDPSVFMYTMHNTLSAVNCAAFSDDASMFALGCADSSIHLYS-STNNGPQPLV 387


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +1

Query: 346 IYVPSAASSRNPMPVLVWIHGGDFATG---SASDYGVKNIVRHGVLVVTMNYRLGP 504
           I+ P   +     P  +W HGG +  G   + + +      +   +VV ++YRL P
Sbjct: 88  IFRPHGTAPEGGWPCFLWFHGGGWVLGNINTENSFATHMCEQAKCVVVNVDYRLAP 143


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 313 GEQTLNCLRLNIYVPSAASSRNPM 384
           G    N LRLNIY PS+ S   P+
Sbjct: 283 GHAESNALRLNIYFPSSESPSKPL 306


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 390 LSLDSWRRFCDRKRFGLRSQKYSSAWSFS 476
           LS+DSW        + + ++ Y+ AW  S
Sbjct: 75  LSVDSWSSITKYDNYTVENESYAKAWHLS 103


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 288 PHFVNGIVNYFRKSYRVCS 232
           P+F+N   N FR+S+  C+
Sbjct: 251 PNFINNHSNVFRRSFHTCN 269


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = +1

Query: 157 AADGDYSIFLGIPYAKVDVNNPFSTATDPIAFPEIIHDAVDEVRCPQTSSSVGEQTLNCL 336
           A +  Y +   +P  KV + N      DP  FP + +        PQT  S+ + +L   
Sbjct: 472 AGEDVYELSRYVPTLKVVLENLIQDKLDPELFPYVRNTT------PQTEVSMEQTSLRSS 525

Query: 337 RLNIYVPSAASSRNPM-PVLVWIHGG 411
           R +     + +S+ P   +LV++ GG
Sbjct: 526 RPSWTRSRSMASKLPREKMLVFVAGG 551


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,159
Number of Sequences: 5004
Number of extensions: 49235
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)