Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13c07f
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    27   1.5  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    27   2.0  
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    27   2.6  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   3.4  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   6.0  

>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 104 LVDTATTAVNTNKRANFILQNRSELKFRLKSQL 6
           L  TA  A   +KR   +L    +  FRLKSQL
Sbjct: 38  LEQTANAAFEQSKRLQLLLSQLQQEAFRLKSQL 70


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 402 DLGMLRLICPPIQKKAYRLFALCKCTISKNI 494
           DL  LR ICP I +  Y+  A     I+KN+
Sbjct: 101 DLSQLREICPQIIELNYKSLASLALEINKNV 131


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 200 VTEKLRNSLSFEAIVPMLKTRALLVELGSATSLVDTATTAVNT 72
           + E  + +  F   V  +K  AL +EL    SL+  ATT++N+
Sbjct: 120 IAESFQRAAGFT--VDCMKENALAIELSDRESLLRAATTSLNS 160


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -2

Query: 200  VTEKLRNSLSFEAIVPMLKTRALLVELGSATSLVDTATTAVNTNK 66
            V +KL N +SF+      ++++  VEL + TS  DT T ++ T K
Sbjct: 951  VKDKL-NKMSFKKKKNEQRSQSFQVELSNLTSEYDTTTESIATLK 994


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +3

Query: 243 YSTQQYAHQGHPSPASGSVTVRDCPRCGG--RCRLEHRHSSVHKLTAQR 383
           YS+  Y+   HP P  G  ++ D P+        L    S+VH +   R
Sbjct: 680 YSSSPYSVFSHPPPYMGRQSLNDSPQTSDFKASNLNDSSSNVHSIFQTR 728


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,220
Number of Sequences: 5004
Number of extensions: 45974
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)