Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13c05r
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              29   0.047
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   4.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   7.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 29.1 bits (62), Expect = 0.047
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 232  APEIRGSWKATNRLTILLKIYPKPSKYSPRHRFTSYYK 119
            +P+I  +   TN LT  +K+ P P+  +P H +T +YK
Sbjct: 1369 SPQITLTATTTNSLT--MKVRPHPTDNAPIHGYTIHYK 1404


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 344 CSCKGLQCQWARGI 385
           C  KG+ C W R I
Sbjct: 542 CGVKGIPCSWGRAI 555


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = -2

Query: 737 RDERQLASAYKQVLDKYKRL----DGVINS 660
           +D   + SAYK  +DK+ RL     G+IN+
Sbjct: 120 KDCSGIVSAYKIAIDKFDRLWILDSGIINN 149


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -2

Query: 737 RDERQLASAYKQVLDKYKRL----DGVINSAAVL 648
           +D   + SAYK  +DK+ RL     G+IN+  ++
Sbjct: 120 KDCSGIVSAYKIAIDKFDRLWVLDSGLINNIQLM 153


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +2

Query: 26  YRISYINREYSIKENXXXXXXXXXXXXPYSRFIITRK-SMSWRVFGRLRIY 175
           Y+  Y ++ +S+KEN            PY   +  R    S ++   +RI+
Sbjct: 120 YQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKLHRHMRIH 170


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 737 RDERQLASAYKQVLDKYKRLDGVINSAAV 651
           +D  ++ SA+K  +DK+ RL  V++S  V
Sbjct: 117 KDCSKIVSAFKIAIDKFDRL-WVLDSGLV 144


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 490 AIYLFTPLLKQRYYSSALEWARRNNL 413
           +IY F   L   + SS+L+W+  + L
Sbjct: 477 SIYSFLERLNLIFMSSSLQWSSTHTL 502


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 490 AIYLFTPLLKQRYYSSALEWARRNNL 413
           +IY F   L   + SS+L+W+  + L
Sbjct: 515 SIYSFLERLNLIFMSSSLQWSSTHTL 540


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,674
Number of Sequences: 438
Number of extensions: 4319
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)