Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13c05f
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    35   0.008
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    27   2.8  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   4.9  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   6.4  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   8.5  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    25   8.5  

>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
 Frame = +1

Query: 283 IKCDVGDERQLASAYKQVLDKYKRLDGVINSAAVLSVDD-NSFN-----RMIDINFTGTV 444
           +K DV D + + +A+K    ++  +D VIN+A    V +  S+N     R +++NF G  
Sbjct: 52  LKLDVTDVKSVETAFKDAKRRFGNVDIVINNAGYGLVGEFESYNIEEMHRQMNVNFWGVA 111

Query: 445 NSTLKALDIM 474
             T +AL++M
Sbjct: 112 YITKEALNLM 121


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 124 RTLYHRHPQNASRNPMPFENQQLHHIYTLLVSVDSGA 14
           R+  H H  +  R P+  + + +HH++   +S DS +
Sbjct: 265 RSSSHDHLTSTPRTPIALQRRSVHHLHDSGISRDSSS 301


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 286 KCDVGDERQLASAYKQVLDKYKRLDGVINSAAVLSVDDNSFNRMIDINFTGTVNS 450
           +CD+G   +LA     +L  Y +LD  +    VL V   +  + I+  + GT++S
Sbjct: 158 QCDIGFNNRLAIHNTLLLSSYTKLDARL-KPMVLLVKHWAKRKQINSPYFGTLSS 211


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 423 INHSVERVIIDAKYCSAVYDAVKPFVFV 340
           INH  + +I+D   C++ YDAV    F+
Sbjct: 26  INHGYKVIIVD-NLCNSCYDAVARVEFI 52


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +1

Query: 292 DVGDERQLASAYKQVLDKYKRLDGV---INSAAVLSVDDNSFNRMIDINFTGTV 444
           D  D  Q+A     V D     D +   + S A   VD NSFNR+ +++    +
Sbjct: 66  DANDACQIACQESSVPDLSSSCDSINSTVESDAGHVVDSNSFNRIDNVSVNAPI 119


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 340 DKYKRLDGVINSAAVLSVDDN--SFNRMIDINFTGTVN 447
           DK ++ DG++N +     DDN  SFN  +  +   T N
Sbjct: 196 DKDRKADGIVNLSVTQEEDDNHQSFNSSLTPSQPTTYN 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,121
Number of Sequences: 5004
Number of extensions: 36038
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)