Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13c05f
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.0  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.0  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   7.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.3  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
 Frame = +1

Query: 313 LASAYKQVLDKYKRL----DGVINS 375
           + SAYK  +DK+ RL     G+IN+
Sbjct: 125 IVSAYKIAIDKFDRLWILDSGIINN 149


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
 Frame = +1

Query: 313 LASAYKQVLDKYKRL----DGVINSAAVL 387
           + SAYK  +DK+ RL     G+IN+  ++
Sbjct: 125 IVSAYKIAIDKFDRLWVLDSGLINNIQLM 153


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 129 HQEHFIIDIHKTLHEIRCHLKTN 61
           ++E+   D  KT   ++CH K N
Sbjct: 114 NEEYTGDDCQKTYQYVQCHYKQN 136


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 301 DERQLASAYKQVLDKYKRLDGVINSAAV 384
           D  ++ SA+K  +DK+ RL  V++S  V
Sbjct: 118 DCSKIVSAFKIAIDKFDRL-WVLDSGLV 144


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 136 HRSPRTLYHRHPQNASRNPMP 74
           H+SP+      P N S+ P P
Sbjct: 28  HQSPQAPQRGSPPNPSQGPPP 48


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 105 IHKTLHEIRCHLKTNNYITF 46
           I +TLH  R  LKT+  +++
Sbjct: 160 IRRTLHMNRTSLKTSKIVSY 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,264
Number of Sequences: 438
Number of extensions: 2359
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)