Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13c03r
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +3

Query: 243 IYPFNLETITKVPGKIFSIYIFFVCETFNWSYNV 344
           +Y F L     V G      +FF C   +W++ V
Sbjct: 439 MYVFQLLDSYAVSGFCLLFLMFFECIAISWAFGV 472


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +3

Query: 243 IYPFNLETITKVPGKIFSIYIFFVCETFNWSYNV 344
           +Y F L     V G      +FF C   +W++ V
Sbjct: 492 MYVFQLLDSYAVSGFCLLFLMFFECIAISWAFGV 525


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 312 VCETFNWSYNVQNISKW 362
           +C    W  NV+ ++KW
Sbjct: 331 ICVQIPWDKNVEALAKW 347


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 182 PVDIDNGKNARKKLPVTNL 238
           P+DI   K A+KK+ + N+
Sbjct: 578 PIDIKYSKIAKKKMMLMNM 596


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,322
Number of Sequences: 438
Number of extensions: 4805
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)