Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13c03f
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 30 0.23
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.53
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p... 28 1.2
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 27 2.1
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy... 26 3.7
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi... 26 3.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 3.7
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 5.0
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 25 8.7
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 25 8.7
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos... 25 8.7
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos... 25 8.7
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 30.3 bits (65), Expect = 0.23
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +1
Query: 418 PFLLQSIEENKKKSRNLYNPTANGRQSDTNPNFIY*ENRMKSLKWKLKLYSI 573
P + + + ++K+RNL + R DT +++ E+ M + + + K+YSI
Sbjct: 45 PVIQYGLNQLEEKARNLESKVLLTRDGDTKAHYLLAESGMNAEQTRQKIYSI 96
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 29.1 bits (62), Expect = 0.53
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -2
Query: 374 VNSSTNCPPVCRSEGLALSTSPSLP 300
+ SS N P+CR++G+A +++PS P
Sbjct: 557 LTSSQNSCPLCRTKGVASASTPSSP 581
>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 535
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 324 AFHVAIAAHVHGVPSPGQLLIR-NQARVVECVVL 226
AF + + VH P PG +L+R NQA + + V+L
Sbjct: 331 AFQMFHSKQVHCDPHPGNILVRKNQAGLCQTVIL 364
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 361 VEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDTNPNFIY 522
V +L +E+D+ Q + P + + EN+K + + +G + NP +Y
Sbjct: 377 VNDLLQELDKNSQNDNGHGPTMETNTTENQKDNARGQSNKGHGFSTSLNPYTLY 430
>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/44 (20%), Positives = 19/44 (43%)
Frame = -2
Query: 194 IRPVACMSSTLRLMEATLAHSTTAITNTTSHAQLNTLTIMIVSN 63
+ P C + T+ + H+T + + H +LN ++ N
Sbjct: 342 VNPTQCEALTMVCAQVMGNHATITVAGASGHCELNVFKPLLAKN 385
>SPAC1851.02 |||1-acylglycerol-3-phosphate
O-acyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 354 PTRLPLRRSGAFHVAIAAHVHGVP 283
P LPL++ GAFH+A+ A V +P
Sbjct: 190 PCLLPLKK-GAFHLAVQAQVPIIP 212
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 170 STLRLMEATLAHST-TAITNTTSHAQLNTLTIMIVSNSIVLNDRSHV 33
ST M T++H+T T+ + TTSH NTL ++ + + S V
Sbjct: 3716 STGSTMHNTVSHATSTSSSFTTSHLPTNTLASTFDNSQSIFSSSSGV 3762
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/45 (22%), Positives = 24/45 (53%)
Frame = +1
Query: 322 SARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKK 456
++RPS + ++ +T +D+R+++ P SI E +++
Sbjct: 919 ASRPSLSRRRNDYINNVTSWLDERREKMGVVRPRASTSILETRRR 963
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 363 RRVN*RD--RPEAAEAVDRPAFPAAKHRRKQEEEQEPLQ 473
+RVN R RPE E ++RP + K+ + +PL+
Sbjct: 489 QRVNMRSFLRPERMEVIERPKKVSKTSNTKETDTMKPLR 527
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/58 (22%), Positives = 26/58 (44%)
Frame = +1
Query: 373 TREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDTNPNFIY*ENRMKSL 546
T ++ ++ +TA L+ E ++ ++ + + PN I EN +KSL
Sbjct: 434 TEGLEDEKEENNTAAESLINQEETTSGEAVTKSTVESSANEEEAEPNEIIEENAVKSL 491
>SPAC664.07c |rad9||checkpoint clamp complex protein
Rad9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 352 GQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTAN-GRQSD 501
G +E++ + R Q ST P L S+E N + +NP + G Q+D
Sbjct: 302 GSDEQEVSSMMGNRWQHSST-PASLFNSVERNNSLTAVAHNPPGSIGWQTD 351
>SPCC16C4.17 |mug123||meiotically upregulated gene
Mug123|Schizosaccharomyces pombe|chr 3|||Manual
Length = 235
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -2
Query: 329 LALSTSPSLPTYM---EYPRLDNSSSGTRPGL 243
L +STS + PTY+ E R ++ SGT P +
Sbjct: 131 LVISTSNTAPTYISMIESSRASSTHSGTAPSI 162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,442
Number of Sequences: 5004
Number of extensions: 56506
Number of successful extensions: 177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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