Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13c03f
(609 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L09634-1|AAA27967.1| 776|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 30 1.5
AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 30 1.5
Z48809-3|CAA88746.2| 199|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 29 2.6
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 29 2.6
Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z68335-3|CAA92730.2| 540|Caenorhabditis elegans Hypothetical pr... 28 6.0
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 28 6.0
U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr... 28 6.0
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 27 7.9
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 27 7.9
Z49068-2|CAA88855.1| 389|Caenorhabditis elegans Hypothetical pr... 27 7.9
U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical pr... 27 7.9
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 7.9
>L09634-1|AAA27967.1| 776|Caenorhabditis elegans Hypothetical
protein C30C11.4 protein.
Length = 776
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Frame = +1
Query: 160 RRVDDMQATGRMRVQKLKMNSDKNHAFHNPGLVPDEELSR--RGYSMYVGSDGDVESARP 333
+R+ +++A G V++ + + + AF + D+ + R + Y Y
Sbjct: 632 KRLSELKAVGTPVVERYRESETRKPAFDSF----DQSIMRVRKAYEDYANGGPTYAHLDS 687
Query: 334 SERQTGGQFVEELTREIDQRQQRQST-----APPFLLQSIEENKKKSRNLYNPTANGRQ 495
E + +E+ + +D+ + +Q T AP + I +NK N+ NP N ++
Sbjct: 688 KEMEKVINAIEDKKKWLDEARHKQETRSKTDAPVVFTEEILQNKNVFENVVNPILNKKK 746
>AF025464-2|AAN84804.1| 496|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform a protein.
Length = 496
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 112 VFVMAVVLCARVASIRRRVDDMQATGRMRVQKLKMNSDKNHAF-HNPGLVPDEELSRRG 285
+FV A + CA + RR++D+ A+ R+ + + + NH P+ ++ R G
Sbjct: 43 LFVFAPLQCANCYNFLRRLNDLAASRAYRIHVVAPDFESNHIIQRTSSAFPNLQIDRAG 101
>AF025464-1|AAN84805.1| 529|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform b protein.
Length = 529
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 112 VFVMAVVLCARVASIRRRVDDMQATGRMRVQKLKMNSDKNHAF-HNPGLVPDEELSRRG 285
+FV A + CA + RR++D+ A+ R+ + + + NH P+ ++ R G
Sbjct: 65 LFVFAPLQCANCYNFLRRLNDLAASRAYRIHVVAPDFESNHIIQRTSSAFPNLQIDRAG 123
>Z48809-3|CAA88746.2| 199|Caenorhabditis elegans Hypothetical
protein T01E8.6 protein.
Length = 199
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +3
Query: 288 LHVRGQRWRRGKRQTFGAADGWAVRRRVN*RDRPEAAEAVDRPAFPAAKH-----RRKQE 452
L+V + W+ GKR TF A+ W R V R++ + A DR A K + ++
Sbjct: 84 LYVEREWWKTGKRMTFWAS--WRQLRDVKRREQIQEVGA-DRMRLKAIKFNTILPQAIRD 140
Query: 453 EEQEPLQSYRKWTPKR 500
E E +Q RK+ R
Sbjct: 141 EAAEKMQKARKYDHPR 156
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +1
Query: 319 ESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSR 462
E +P++ + + +E L +E ++R + + PP +LQS+ E + +
Sbjct: 222 EPVKPADLEMDAE-IERLIKEEEERMKNVAEQPPLVLQSLPETPEAQK 268
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +1
Query: 319 ESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSR 462
E +P++ + + +E L +E ++R + + PP +LQS+ E + +
Sbjct: 222 EPVKPADLEMDAE-IERLIKEEEERMKNVAEQPPLVLQSLPETPEAQK 268
>Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical
protein F39B2.1 protein.
Length = 564
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 144 PRAQHHCHHEHNQPCAAEHAHY 79
P A H HH H+Q +H HY
Sbjct: 44 PTAPPHHHHHHHQHQPQQHLHY 65
>Z68335-3|CAA92730.2| 540|Caenorhabditis elegans Hypothetical
protein C29F4.2 protein.
Length = 540
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/81 (23%), Positives = 36/81 (44%)
Frame = +1
Query: 274 SRRGYSMYVGSDGDVESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKK 453
++R + Y GS + ++ P + + L ++DQ +++ PP +QS+ E K+
Sbjct: 351 AQRNVNFYFGSATNADAQIPDDVRQITMIPHPLNEKLDQMYGKRTNRPP--VQSVVELKR 408
Query: 454 KSRNLYNPTANGRQSDTNPNF 516
R T N R+ F
Sbjct: 409 DQR---FSTGNNRKQTLEAKF 426
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
F42C5.10 protein.
Length = 1292
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 135 QHHCHHEHNQPCAAEHAHYY 76
QHH HH H +EH H+Y
Sbjct: 946 QHH-HHHHYHTDGSEHVHHY 964
>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical
protein T23F2.2b protein.
Length = 1538
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 331 PSERQTGGQFVEELTREIDQRQQR--QSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDT 504
P R + +F E+ T I + Q + A F+ ++ +EN S +L NGR+ +
Sbjct: 51 PGFRPSPDRFPEKGTTRIPKLQVTWWEKNAVAFIGETSDENNTDSEHLMRDLGNGRREEE 110
Query: 505 NP 510
P
Sbjct: 111 KP 112
>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical
protein T23F2.2a protein.
Length = 1534
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 331 PSERQTGGQFVEELTREIDQRQQR--QSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDT 504
P R + +F E+ T I + Q + A F+ ++ +EN S +L NGR+ +
Sbjct: 51 PGFRPSPDRFPEKGTTRIPKLQVTWWEKNAVAFIGETSDENNTDSEHLMRDLGNGRREEE 110
Query: 505 NP 510
P
Sbjct: 111 KP 112
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 27.5 bits (58), Expect = 7.9
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Frame = +1
Query: 169 DDMQATGRMRVQKLKMNSDKNHAFHNPGL---VPDEELSRRGYSMYVGSDGDVESARPSE 339
++ + M VQ +K D+ FH L V + L R + + ++
Sbjct: 924 EEEKKKAEMEVQMMKKELDQK-IFHRKSLFKKVQEGGLCERQLMDKENNIATLNASLEEN 982
Query: 340 RQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGR 492
+Q +F E+L R D QR+S L + I ENK K T +G+
Sbjct: 983 QQRQKRFEEDL-RSFDSSHQRESILKDQLTRMIIENKIKELKRTLATFDGQ 1032
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein
T04H1.4a protein.
Length = 1298
Score = 27.5 bits (58), Expect = 7.9
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Frame = +1
Query: 169 DDMQATGRMRVQKLKMNSDKNHAFHNPGL---VPDEELSRRGYSMYVGSDGDVESARPSE 339
++ + M VQ +K D+ FH L V + L R + + ++
Sbjct: 910 EEEKKKAEMEVQMMKKELDQK-IFHRKSLFKKVQEGGLCERQLMDKENNIATLNASLEEN 968
Query: 340 RQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGR 492
+Q +F E+L R D QR+S L + I ENK K T +G+
Sbjct: 969 QQRQKRFEEDL-RSFDSSHQRESILKDQLTRMIIENKIKELKRTLATFDGQ 1018
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 27.5 bits (58), Expect = 7.9
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Frame = +1
Query: 169 DDMQATGRMRVQKLKMNSDKNHAFHNPGL---VPDEELSRRGYSMYVGSDGDVESARPSE 339
++ + M VQ +K D+ FH L V + L R + + ++
Sbjct: 910 EEEKKKAEMEVQMMKKELDQK-IFHRKSLFKKVQEGGLCERQLMDKENNIATLNASLEEN 968
Query: 340 RQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGR 492
+Q +F E+L R D QR+S L + I ENK K T +G+
Sbjct: 969 QQRQKRFEEDL-RSFDSSHQRESILKDQLTRMIIENKIKELKRTLATFDGQ 1018
>Z49068-2|CAA88855.1| 389|Caenorhabditis elegans Hypothetical
protein K01C8.2 protein.
Length = 389
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 401 LCCLWSISLVNSSTNCPPVCRSEGLALSTSPSLPT 297
LCC SIS + ++ P S G +S SPS+ T
Sbjct: 121 LCCSSSISTSSCPSDFTPAVGSNGGTVSCSPSVST 155
>U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical
protein M02D8.3 protein.
Length = 915
Score = 27.5 bits (58), Expect = 7.9
Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = +1
Query: 196 RVQKLKMNSDKNHAFHNPGLVPDEELSRRGYSMYVGSDGDVESARPSERQTGGQFVEELT 375
++ K+ N+D N + P P R Y V SDG+ + + ++ + + +E T
Sbjct: 338 QLAKVDENTDMNSSSDLPRKTPRRSCVRGTYKDLVDSDGEEDKEKKTKMEMEKE--KEKT 395
Query: 376 REIDQRQQR-QSTAPPFLLQSIEENKKKSRNLYNPT 480
R+ ++ +R + LL+ + +++R Y T
Sbjct: 396 RKKEENNKRKEKKEAEKLLERSYKRAEQARVRYEKT 431
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -1
Query: 132 HHCHHEHNQPCAAEHAHYYDRFQLH 58
H HHEH A H H+ D+ H
Sbjct: 689 HGAHHEHGAHHGAHHGHHDDKENHH 713
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,258,687
Number of Sequences: 27780
Number of extensions: 344579
Number of successful extensions: 1342
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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