Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13c01f
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0838 - 28550036-28550237,28550595-28550676,28550972-285510...    27   4.1  
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16...    26   9.6  
04_04_0584 + 26381220-26381232,26381583-26381594,26381921-263820...    26   9.6  
01_07_0167 - 41613834-41613842,41614060-41615056,41615456-416163...    26   9.6  

>04_04_0838 -
           28550036-28550237,28550595-28550676,28550972-28551011,
           28551342-28551416,28551448-28551543,28551710-28551805,
           28551897-28551974,28552064-28552170,28552450-28552477,
           28552777-28552898,28554106-28554172,28554336-28554508,
           28554763-28554846,28555616-28555733,28556093-28556164,
           28557026-28557118,28557484-28557636,28558000-28558086,
           28559436-28559528,28560416-28560643,28561106-28561207,
           28561390-28561596,28561798-28561846,28562385-28562537,
           28562649-28562712,28562905-28563175,28564008-28564072,
           28564184-28564337
          Length = 1052

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -3

Query: 133 GSTPNTGLYDILPNGPV-GNPCNCSDHFDF 47
           GS PN    DI+P  P   NP    +H DF
Sbjct: 92  GSPPNKAAPDIVPQAPAEENPTPIREHVDF 121


>07_01_0024 +
           159839-159923,160395-160442,160884-160895,161347-161427,
           161530-161675,161918-161965,162054-162203,165647-165706,
           165788-165859,165960-166409,166640-166839,167239-168236,
           168676-168683,169057-169230,169341-169659,169748-169824,
           169897-169966,170040-170111,170204-170418,170540-170665,
           170751-171046,171133-171157,171163-171303,171400-171498,
           171571-171702,171793-171912
          Length = 1407

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
 Frame = +2

Query: 44  RKIKMIGAVARISNRTVGKNVVKTSVRSGSNGGIPGE--NLPFDINNKARLTFHMFWFFG 217
           + +  +G       R    N V   +R       PG    L  D NNK +    MFW  G
Sbjct: 395 KDVSNVGTTINSETRNTDMNQVMEYLRQ-KEAKDPGYYYKLTLDENNKVK---SMFWTDG 450

Query: 218 SGFAAPFLVVWHQM 259
           S   A F  +W QM
Sbjct: 451 SLTRAEFESLWLQM 464


>04_04_0584 +
           26381220-26381232,26381583-26381594,26381921-26382028,
           26382137-26382217,26382320-26382465,26382550-26382624,
           26382709-26382756,26382845-26382994,26383081-26383140,
           26383394-26384274,26384674-26385670,26385887-26385895
          Length = 859

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
 Frame = +2

Query: 44  RKIKMIGAVARISNRTVGKNVVKTSVRSGSNGGIPGE--NLPFDINNKARLTFHMFWFFG 217
           + +  +G       R    N V   +R       PG    L  D NNK +    MFW  G
Sbjct: 469 KDVSNVGTAINSETRNTDMNQVMEYLRQ-KEAKDPGYYYKLTLDENNKVK---SMFWTDG 524

Query: 218 SGFAAPFLVVWHQM 259
           S   A F  +W QM
Sbjct: 525 SLTRAEFESLWLQM 538


>01_07_0167 -
           41613834-41613842,41614060-41615056,41615456-41616336,
           41616437-41616508,41616590-41616649,41616736-41616885,
           41616974-41617021,41617107-41617181,41617266-41617411,
           41617514-41617594,41617703-41617810,41618046-41618057,
           41618137-41618148,41618499-41618546,41619021-41619105
          Length = 927

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
 Frame = +2

Query: 44  RKIKMIGAVARISNRTVGKNVVKTSVRSGSNGGIPGE--NLPFDINNKARLTFHMFWFFG 217
           + +  +G       R    N V   +R       PG    L  D NNK +    MFW  G
Sbjct: 537 KDVSNVGTAINSETRNTDMNQVMEYLRQ-KEAKDPGYYYKLTLDENNKVK---SMFWTDG 592

Query: 218 SGFAAPFLVVWHQM 259
           S   A F  +W QM
Sbjct: 593 SLTRAEFESLWLQM 606


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,022,698
Number of Sequences: 37544
Number of extensions: 203304
Number of successful extensions: 448
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)