Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13c01f
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81070-5|CAB02999.2|   84|Caenorhabditis elegans Hypothetical pr...    36   0.008
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    27   3.7  
U97012-3|AAK39144.2|  588|Caenorhabditis elegans Groundhog (hedg...    27   3.7  
U70847-2|AAB09105.2|  185|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AC024807-1|AAF59529.5|  704|Caenorhabditis elegans Hypothetical ...    27   4.9  

>Z81070-5|CAB02999.2|   84|Caenorhabditis elegans Hypothetical
           protein F26E4.6 protein.
          Length = 84

 Score = 36.3 bits (80), Expect = 0.008
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +2

Query: 134 NGGIPGENLPFDINNKARLTFHMFWFFGSGFAAPFLVVWHQMRK 265
           N G     LPF + NK         F   GF APF+VV +Q+RK
Sbjct: 38  NDGWASARLPFHVTNKWGFAAKAVTFLAIGFWAPFIVVEYQLRK 81


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical protein
            C29A12.4 protein.
          Length = 1560

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -3

Query: 211  EPEHVEGQASLIIDVEWQILPGNTAVGSTPNTGLYDILPNGPVGN 77
            + EH++ + + +I     + P  T   STP+  +Y + P  P+G+
Sbjct: 1384 QTEHIDNEVTALITSS--LAPQKTRPKSTPHFTVYPVRPTTPMGD 1426


>U97012-3|AAK39144.2|  588|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 9 protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 74  RISNRTVGKNVVKTSVRSGSNGGIPGENLPFDINN 178
           R+   T  +N    SV SG N G+P ++LP    N
Sbjct: 65  RVKRSTSFRNGTLRSVHSGGNHGLPVDSLPTSNKN 99


>U70847-2|AAB09105.2|  185|Caenorhabditis elegans Hypothetical
           protein K09B3.1 protein.
          Length = 185

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 81  PTGPLGRMS*RPVLGV-DPTAVFPGRICHSTSIIRLA*PSTCSGS 212
           P G  G M   P  G+ DP A F GR  + T I+R   PS+ S S
Sbjct: 127 PFGGYGGMG-YPQAGLLDPLAQFIGRSIYETGILRQPTPSSSSKS 170


>AC024807-1|AAF59529.5|  704|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.1 protein.
          Length = 704

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 250 PHNKEGCCKSAAEEPEHVEGQAS 182
           P N E   ++A E PE++E QAS
Sbjct: 452 PENPEALAENADENPENLESQAS 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,487,582
Number of Sequences: 27780
Number of extensions: 170309
Number of successful extensions: 351
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)