Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13b23f
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0674 - 21745321-21746223,21746229-21747608 34 0.10
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 29 3.8
06_03_0024 - 15563574-15563632,15563887-15563914,15564017-155642... 29 3.8
05_07_0228 - 28526885-28527046,28527151-28527241,28528315-285284... 29 3.8
04_04_0977 + 29851086-29851463,29852054-29852551,29853665-298537... 29 3.8
12_02_0478 + 19514509-19514940,19515749-19515820,19515954-195159... 28 5.0
10_05_0046 + 8516043-8516425,8517908-8518019,8518276-8518377,851... 28 5.0
09_04_0502 - 18163192-18163435,18164000-18164154,18164243-181644... 28 5.0
06_01_1175 - 10094144-10094387,10094573-10094730,10094851-100950... 28 5.0
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 28 6.6
01_05_0222 + 19462487-19462663,19462916-19462991,19463106-194631... 28 6.6
08_02_1372 + 26500093-26500154,26500733-26500933,26501858-265019... 27 8.7
01_01_0477 + 3511047-3511233,3512131-3512198,3512285-3512373,351... 27 8.7
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 33.9 bits (74), Expect = 0.10
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = +2
Query: 284 STP*GIHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGTDLLIQTTI 463
ST G ++ P+ PLS+ST T+ LSS +P L T TD + TT
Sbjct: 582 STATGKTSSTPSTSPLSTSTSKTSSTPSTSPLSSSTIKIPTTARTGELSTPTDKIPTTTR 641
Query: 464 LPPLASRMSVAPSATFWFGSSTMLEAI-GTKC 556
L++ S P+A ST I T C
Sbjct: 642 AGDLSTATSKIPTAPGTSELSTTTSKISSTSC 673
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 533 ALLMSQTKKL-PRARPTSGTPAAAVL*FELASLCQSTTMT 417
+L+ S T+ L P+A PTS AA V +L SLC T
Sbjct: 527 SLISSNTENLSPQALPTSSESAAGVTIDDLRSLCSQEFFT 566
>06_03_0024 -
15563574-15563632,15563887-15563914,15564017-15564202,
15564283-15564332,15564435-15564691,15564772-15564910,
15565627-15565716,15567354-15567663
Length = 372
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 288 LREEFTLPRQPRYRCHRPRMEQQWQHPDEPSHQIRLPCRSRRE 416
+ + F P QP +R P + + PDEP H+ P S+ E
Sbjct: 177 IHQSFEEPDQPVHRTETPALGYHAE-PDEPIHRTEAPALSQPE 218
>05_07_0228 -
28526885-28527046,28527151-28527241,28528315-28528455,
28528560-28528625,28529180-28529317,28529759-28529860,
28530156-28530236,28530314-28530383,28530598-28530674,
28531035-28531483
Length = 458
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 442 LANSNYNTAAAGVPDVGRALGNFLVWLINNAGGNWNQVHLIGFSLGAHVVGNA 600
+ N T + V D + +F+ + GG+ NQ++L+G S GAH+ A
Sbjct: 225 IGNFPQGTISDMVSDASDGI-SFVCETVGAYGGDPNQIYLMGQSAGAHIAACA 276
>04_04_0977 +
29851086-29851463,29852054-29852551,29853665-29853754,
29854369-29854491
Length = 362
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 434 GTDLLIQTTILPPLASRMSVAPSATFWFGSSTMLEAIGTK 553
G D+LI T A+ +V P A+F FG++ A GT+
Sbjct: 10 GGDVLIYDTFNASAAAAAAVVPPASFLFGNNNAGGAAGTE 49
>12_02_0478 +
19514509-19514940,19515749-19515820,19515954-19515986,
19516169-19516830,19516905-19517045,19518634-19518830,
19518878-19518965,19518987-19519041,19519501-19519571,
19519709-19519763,19519881-19519896,19520286-19520361,
19521202-19521240,19521312-19521333
Length = 652
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/84 (23%), Positives = 38/84 (45%)
Frame = -3
Query: 527 LMSQTKKLPRARPTSGTPAAAVL*FELASLCQSTTMTFTS*TARKADLMRGFIWVLPLLF 348
L Q +++ + GTP A V +++ C S + T + ++ DL+ G + V+P
Sbjct: 518 LTVQKRRITPSTDFLGTPVAEVAHWQILDACNSNSHTVPN--VQEIDLLHGKLTVVPASV 575
Query: 347 HPWTMTTVPRLAR*CEFLTELMLP 276
P+ + R+ E L + P
Sbjct: 576 -PFLAILICRICSCSEQLLSFLTP 598
>10_05_0046 +
8516043-8516425,8517908-8518019,8518276-8518377,
8518605-8518657,8518976-8519062,8519162-8519830,
8520154-8520214,8520295-8520342
Length = 504
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 192 ITGLQKRRQ*SVLAFHQTEPKQSPGAC 272
+TG +KR+ +V F Q +P Q G C
Sbjct: 384 VTGAKKRKSGNVRRFEQNKPTQGQGEC 410
>09_04_0502 -
18163192-18163435,18164000-18164154,18164243-18164447,
18164530-18164819,18164845-18164853,18164920-18165085,
18165170-18165258,18165365-18165432,18165843-18166164
Length = 515
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 34 ALAGLVTLCSGVAIPTIPGDNSHYVEGESRYI 129
AL +V+L S + IPT G+ + VEG RY+
Sbjct: 406 ALDYIVSLESDIFIPTYDGNMAKVVEGHRRYL 437
>06_01_1175 -
10094144-10094387,10094573-10094730,10094851-10095055,
10095184-10095473,10095605-10095770,10095872-10095960,
10096060-10096127,10097185-10097473
Length = 502
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 34 ALAGLVTLCSGVAIPTIPGDNSHYVEGESRYI 129
AL LV+L S + +PT G+ + VEG RY+
Sbjct: 393 ALDYLVSLESDIFVPTYDGNMAKVVEGHRRYM 424
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +1
Query: 397 LAVQDVNVIVVDWHRLANSNYNTAAAGVPDVGRALGNFLVWLINNAGGNWNQVHLIGFSL 576
LA + + V +D+ N T V D + + +++ I + GG+ N+++L+G S
Sbjct: 170 LAERGIIVACIDYR---NFPQGTIGDMVSDASQGI-SYVCNNIASYGGDPNRIYLVGQSA 225
Query: 577 GAHVVGNA 600
GAH+ A
Sbjct: 226 GAHIAACA 233
>01_05_0222 +
19462487-19462663,19462916-19462991,19463106-19463185,
19463293-19463342,19463436-19463520,19463640-19463738,
19464110-19464346
Length = 267
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 484 DVGRALGNFLVWLINNAGGNWNQVHL 561
D+G G FL+WL N+G N + L
Sbjct: 81 DIGCGSGRFLIWLAKNSGERRNYLGL 106
>08_02_1372 +
26500093-26500154,26500733-26500933,26501858-26501936,
26502652-26502752,26503417-26503516,26503893-26503934,
26504026-26504067,26504352-26504509,26504708-26504780
Length = 285
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 3 YTVSHHETLHSACWFSYIMLW 65
Y HHE ++SAC +Y+ W
Sbjct: 263 YPAEHHEAMNSACMNTYMPPW 283
>01_01_0477 +
3511047-3511233,3512131-3512198,3512285-3512373,
3512607-3512769,3512846-3513135,3513231-3513435,
3513518-3513675,3514091-3514337
Length = 468
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 34 ALAGLVTLCSGVAIPTIPGDNSHYVEGESRY 126
AL +V++ S V IP+ G+ + VEG RY
Sbjct: 358 ALDYMVSIASDVFIPSYDGNMARVVEGHRRY 388
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,046,265
Number of Sequences: 37544
Number of extensions: 413089
Number of successful extensions: 1230
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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