Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13b22r
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    69   4e-14
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.3  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   8.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.3  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 68.9 bits (161), Expect = 4e-14
 Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 10/227 (4%)
 Frame = -1

Query: 683 PHLAAMVITLTDGRTSMCGASLLSHTRSVTAAHCWRTRSAQGRXXXXXXXXXXXXXXXFR 504
           P +A +  T   G   +CGA+++S    +TAAHC    +                     
Sbjct: 173 PMMAGIKRTYEPGM--ICGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNA 230

Query: 503 I---NTNNVQMHGSYNM----DNLHNDVAMIIHGR-VGYTNVIQPIFLPPSHLLNNQFVG 348
               + N V +H  Y++    D   ND+A++   + + + + + P  LP  H L++ F G
Sbjct: 231 TVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDS-FAG 289

Query: 347 TWAWAAGYGRTSDASGSNTRKHQVALQVITNADCARTFGNGVIASTLCVNTQGGRSTCRG 168
           +     G+G TS     +    +  L ++T  +C + +GN ++ + +C   +G +  C+ 
Sbjct: 290 SDVTVLGWGHTSFNGMLSHILQKTTLNMLTQVECYKYYGN-IMVNAMCAYAKG-KDACQM 347

Query: 167 DSGGPLAFTYGGRRTL--IGITSFGAAQCQRGHPAGFARVTSFASWI 33
           DSGGP+ +     + L  IGI S+G A+C + +P G  +V S+  WI
Sbjct: 348 DSGGPVLWQNPRTKRLVNIGIISWG-AECGK-YPNGNTKVGSYIDWI 392


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 123 GATSSIRESEGSTGVSAAGAAPPLGVHA 206
           GATSS+    GST  S+A  A    V A
Sbjct: 113 GATSSMVPGFGSTAASSAALAAAAAVDA 140


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 399 PADLPAPLTSPQQPIRG 349
           P   P+P  SPQ P RG
Sbjct: 21  PGPQPSPHQSPQAPQRG 37


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 88   VSGDIRLVSPGSPRSLL 38
            ++  I+LVSPG  +SLL
Sbjct: 1021 LASQIKLVSPGQIKSLL 1037


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 570 PGPPAVSRGHGASVAQQ 620
           PGPP V   HG    +Q
Sbjct: 332 PGPPGVPGDHGDHAPKQ 348


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 570 PGPPAVSRGHGASVAQQ 620
           PGPP V   HG    +Q
Sbjct: 332 PGPPGVPGDHGDHAPKQ 348


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 486 NIVSVNSESTSEELSGAETQLKRASLSA 569
           N+   NSE T ++   +++ +KR  +S+
Sbjct: 301 NVEETNSEETHQKDGSSDSVIKRTVVSS 328


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 486 NIVSVNSESTSEELSGAETQLKRASLSA 569
           N+   NSE T ++   +++ +KR  +S+
Sbjct: 216 NVEETNSEETHQKDGSSDSVIKRTVVSS 243


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 486 NIVSVNSESTSEELSGAETQLKRASLSA 569
           N+   NSE T ++   +++ +KR  +S+
Sbjct: 535 NVEETNSEETHQKDGSSDSVIKRTVVSS 562


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 570 PGPPAVSRGHGASVAQQ 620
           PGPP V   HG    +Q
Sbjct: 271 PGPPGVPGDHGDHAPKQ 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,902
Number of Sequences: 438
Number of extensions: 4585
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)