Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13b20f
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   2.4  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    26   3.1  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   3.1  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    26   4.1  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   5.5  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   7.2  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   7.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   7.2  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    25   9.5  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    25   9.5  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   9.5  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   9.5  

>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 343 AVDNNKERQVSIVVRVPDRVDIAICNNLMVVLVTSG 236
           A+ +  E  +++VVRV  R D  + +N  + + TSG
Sbjct: 64  ALHDENETNINVVVRVRGRTDQEVRDNSSLAVSTSG 99


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 131 SKRIGLHLPHSDCCLQGSW 75
           S  +   LPHSD  L GSW
Sbjct: 290 SNSVSAKLPHSDSVLTGSW 308


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 227 WLFTRRNQNNHQVITNGNVNS--IRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRPALLA 400
           W+FT  ++N  QV  NG + S     +N   + PL    +G  S+G+     + +  LL 
Sbjct: 425 WVFTSDDRNLAQVWVNGRLVSGFEMKANLKNSTPL---TNGVTSSGHQVFKELTQAHLLP 481

Query: 401 VSDC 412
            + C
Sbjct: 482 RTQC 485


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 95  SHYVEGVSRYVWMPDGEGVPHLVDLEEPAEEDILMSR 205
           S Y +G+S  V +  G+GV H+V + E    + L+ R
Sbjct: 141 SLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGR 177


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 284 NSIRNSNYNGNLPLFVIVHGWNSNGN 361
           +SIRNS++N  L LF  V    S+GN
Sbjct: 604 SSIRNSDFNSQLYLFETVGVLISSGN 629


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +1

Query: 193 PYVKERCKQPIL---AFHQT*PKQPSSYYKWQCQLYPELELQWKPASLCYCPRLEQQ 354
           P+ +E  ++P+L   A   +   QP+S      +LYP       PAS    P L  Q
Sbjct: 217 PFPRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQ 273


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 155 HLVDLEEPAEEDILMSRNGANN 220
           +LVD++EPAEE I + ++  N+
Sbjct: 52  NLVDVQEPAEETIPLEQDKEND 73


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 247  PKQPSSYYKWQCQLYPELELQWKPASLCYCPRL 345
            PK P  +Y+W  + +PE    W  +   YC  L
Sbjct: 2185 PKFPPVFYEWFVESFPEPN-NWVTSRQNYCRTL 2216


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 200 SRNGANNQYWLFTRRNQNNHQVITNGNVNSIRNSNY 307
           S+ G N +  +FT   +N   ++  G+++S   +NY
Sbjct: 38  SKKGTNEEVSVFTFDKKNLSTLLKRGSIDSNLKTNY 73


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 248 QNNHQVITNGNVNSIRNSN 304
           QNNHQV   GN+    N N
Sbjct: 120 QNNHQVFLIGNIEFHSNEN 138


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 198 CQGTVQTTNTGFSPDVTKTTI 260
           C+ T +  N GF+PD+ K  +
Sbjct: 374 CRVTTEDPNNGFAPDIGKIEV 394


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 195 LCQGTVQTTNTGFSPDVT 248
           LC  +VQ+ +T   PD+T
Sbjct: 248 LCSNSVQSAHTNLQPDIT 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,205
Number of Sequences: 5004
Number of extensions: 50553
Number of successful extensions: 175
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)