Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13b20f
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 31 0.45
10_01_0044 - 583349-584044 31 0.59
12_02_0642 + 21454142-21454251,21454683-21454872,21454988-214550... 31 0.79
12_02_0639 + 21443480-21443589,21444022-21444211,21444327-214444... 31 0.79
12_02_0633 + 21402847-21402862,21403143-21404975,21405052-214051... 31 0.79
10_08_0848 + 21035446-21035461,21035742-21036233,21036400-210369... 31 0.79
05_03_0187 + 9413575-9414895,9415014-9415289,9415513-9415631,941... 31 0.79
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795... 31 0.79
01_06_0544 + 30118208-30118417,30118959-30119063,30119179-301192... 31 0.79
01_04_0076 + 15780981-15780996,15781277-15783109,15783186-157833... 31 0.79
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783... 29 2.4
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745... 29 3.2
12_02_1175 + 26702744-26704507 28 4.2
01_01_0556 + 4090432-4090500,4091414-4092030,4092408-4092533,409... 28 4.2
10_06_0012 - 9586478-9588880 28 5.5
07_01_0452 - 3418572-3418763,3419140-3419223 28 5.5
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 27 7.3
04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334 27 7.3
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582... 27 7.3
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 27 7.3
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 27 9.7
07_03_1779 - 29458889-29459249,29461107-29461283,29461374-294615... 27 9.7
07_03_1342 - 25891761-25892102,25892588-25893135,25893342-258950... 27 9.7
07_03_0865 + 22130880-22130921,22131938-22132170,22132268-221323... 27 9.7
03_05_0717 + 27097367-27097621,27097744-27097866,27098136-270983... 27 9.7
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 31.5 bits (68), Expect = 0.45
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +2
Query: 158 LVDLEEPAEEDILMSRNGANNQYWLFTRRNQNNHQVITNGNVNSIRNSNYNGNLPLFVIV 337
L D +E + +L+S++ NN N N++ N N NS N Y G + + +
Sbjct: 165 LGDKDEEVDSWLLLSKDSDNNN----NNNNNNDNDNNDNNNSNSSNNGMYFGEVDEYFDL 220
Query: 338 HGWNS 352
G+NS
Sbjct: 221 VGYNS 225
>10_01_0044 - 583349-584044
Length = 231
Score = 31.1 bits (67), Expect = 0.59
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Frame = -2
Query: 532 SVVDEPDQKVAKELSDTGNSIDGSVV*TVGKTTPVHNNNVAVGDGQQGGADH--GVH--S 365
+VV + +V ++ TG+S DG + +G + N G Q+ DH GVH
Sbjct: 71 TVVQKYQVRVVADVPGTGSSKDGEMKQALGGSAQPSNKGATNGSAQENQGDHSQGVHGVQ 130
Query: 364 GVSVAVP---AVDNNKERQVSIVVRVPDRVDIAICN 266
G P +++ + DRVD A+ N
Sbjct: 131 GDGTQGPRGGSLNQDGSASQEFFNNFQDRVDYAVHN 166
>12_02_0642 +
21454142-21454251,21454683-21454872,21454988-21455069,
21455224-21455802,21455854-21456909,21457133-21457251,
21457369-21457812
Length = 859
Score = 30.7 bits (66), Expect = 0.79
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 328 CYCPRLEQQRKLRCEHHDPPRLAGRLRLQRYCCGL 432
C+CP + ++ LRC++ D AG R++ + G+
Sbjct: 157 CFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGI 191
>12_02_0639 +
21443480-21443589,21444022-21444211,21444327-21444408,
21444563-21445054,21445221-21446246,21446470-21446588,
21446706-21447149
Length = 820
Score = 30.7 bits (66), Expect = 0.79
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 328 CYCPRLEQQRKLRCEHHDPPRLAGRLRLQRYCCGL 432
C+CP + ++ LRC++ D AG R++ + G+
Sbjct: 157 CFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGI 191
>12_02_0633 +
21402847-21402862,21403143-21404975,21405052-21405170,
21405288-21405722
Length = 800
Score = 30.7 bits (66), Expect = 0.79
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 328 CYCPRLEQQRKLRCEHHDPPRLAGRLRLQRYCCGL 432
C+CP + ++ LRC++ D AG R++ + G+
Sbjct: 35 CFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGI 69
>10_08_0848 +
21035446-21035461,21035742-21036233,21036400-21036956,
21037084-21037539,21037886-21038302
Length = 645
Score = 30.7 bits (66), Expect = 0.79
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 328 CYCPRLEQQRKLRCEHHDPPRLAGRLRLQRYCCGL 432
C+CP + ++ LRC++ D AG R++ + G+
Sbjct: 35 CFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGI 69
>05_03_0187 +
9413575-9414895,9415014-9415289,9415513-9415631,
9415749-9416192
Length = 719
Score = 30.7 bits (66), Expect = 0.79
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 328 CYCPRLEQQRKLRCEHHDPPRLAGRLRLQRYCCGL 432
C+CP + ++ LRC++ D AG R++ + G+
Sbjct: 39 CFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGI 73
>05_03_0065 -
7953414-7953845,7953963-7954081,7954158-7955990,
7957103-7957559
Length = 946
Score = 30.7 bits (66), Expect = 0.79
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 328 CYCPRLEQQRKLRCEHHDPPRLAGRLRLQRYCCGL 432
C+CP + ++ LRC++ D AG R++ + G+
Sbjct: 182 CFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGI 216
>01_06_0544 +
30118208-30118417,30118959-30119063,30119179-30119260,
30119415-30121250,30121327-30121445,30121563-30122006
Length = 931
Score = 30.7 bits (66), Expect = 0.79
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 328 CYCPRLEQQRKLRCEHHDPPRLAGRLRLQRYCCGL 432
C+CP + ++ LRC++ D AG R++ + G+
Sbjct: 162 CFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGI 196
>01_04_0076 +
15780981-15780996,15781277-15783109,15783186-15783304,
15783422-15783724
Length = 756
Score = 30.7 bits (66), Expect = 0.79
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 328 CYCPRLEQQRKLRCEHHDPPRLAGRLRLQRYCCGL 432
C+CP + ++ LRC++ D AG R++ + G+
Sbjct: 35 CFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGI 69
>04_04_1197 +
31672019-31672325,31672431-31672740,31673334-31678335,
31678677-31678715
Length = 1885
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 210 VQTTNTGFSPDVTKTTIKLLQMAMSTLSGTRTTMETC 320
VQ +GF K+ KL+Q+++S L RT E C
Sbjct: 845 VQNNLSGFEVTQLKSMNKLVQLSVSQLENVRTQEEAC 881
>02_05_1336 +
35773629-35773856,35773931-35774085,35774217-35774549,
35774615-35774927,35776992-35777168,35777281-35777397,
35777532-35777698,35777800-35778024,35778127-35778448,
35778542-35778786,35778993-35779131,35779212-35779304,
35779509-35779577
Length = 860
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 337 PRLEQQRKLRCEHHDPPRLAGRLRLQRYCCGLAWSCQRSIQHCRQWS 477
P L +Q E +P R+ R + ++ C L W+ S+Q +WS
Sbjct: 812 PTLGEQPAQPTESAEPNRIIPRPKERQDCNQLTWTTAPSLQFLNRWS 858
>12_02_1175 + 26702744-26704507
Length = 587
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 537 PPPLLMSQTKKLPRNCP-TLGTPLTAVLYRPLARPRQSTTITLQSETASK 391
PPPL +S + K P + P T L +L+ PL PR+ T + + SK
Sbjct: 313 PPPLPVSSSSK-PTSAPRTFARRLVDLLHSPLYLPRRLTIPDIAAHRWSK 361
>01_01_0556 +
4090432-4090500,4091414-4092030,4092408-4092533,
4092619-4092895,4093021-4093251
Length = 439
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +2
Query: 224 YWLFTRRNQNNHQVITNGNVNSIRNSNYNGNLPLFVIVHG---WNSNGNSAVNTMIRPAL 394
YW F RN+ N + + V+S R+ + + HG +S N V + P +
Sbjct: 171 YWRFLHRNRQNTEQESTNQVSSERDVYEPNSYVVVSSAHGSEVVDSGNNGGVARIASPRV 230
Query: 395 LAVSDCNVIVVD 430
A+ C + +D
Sbjct: 231 YALVACFKLALD 242
>10_06_0012 - 9586478-9588880
Length = 800
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 344 WNSNGNSAVNTMIRPALLAVSDCNVIVVDWRGLANGLYNTAVN 472
W++NG + V P L SD N++++D + N +++T VN
Sbjct: 78 WSANGENPVVDPASPELAISSDGNMVILD-QVTKNIIWSTHVN 119
>07_01_0452 - 3418572-3418763,3419140-3419223
Length = 91
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -3
Query: 507 KLPRNCPTLGTPL---TAVLYRPLARPRQSTTITLQSET 400
KL NCPT G P T L +PL R + T L S T
Sbjct: 42 KLKINCPTTGLPSVDHTNHLIKPLGCARDANTTALYSTT 80
>08_01_0461 -
4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 27.5 bits (58), Expect = 7.3
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 40 WLNSIVFWQCYPHDPWRQQSL 102
WL+S +F CYP P+ ++++
Sbjct: 769 WLSSFLFNSCYPSGPYERRTI 789
>04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334
Length = 554
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 405 PTATLLLWT--GVVLPTVYTTLPSMEFPV 485
P +T+L+WT G ++ VYTT+P P+
Sbjct: 19 PASTMLVWTQVGEIVFPVYTTMPISTCPL 47
>04_03_0052 +
10257109-10257337,10257580-10257668,10257708-10258289,
10258477-10258668,10259392-10259563,10260190-10260461,
10260682-10260801,10260912-10260968,10261631-10261831,
10262451-10262511,10262712-10263013
Length = 758
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -2
Query: 532 SVVDEPDQKVAKELSDTGNSIDGSVV*TVGKTTPVHNNNVAVGDGQQGGADHGV 371
+VV + K+ ++ TG+S DG V TT G G G GV
Sbjct: 691 TVVQKYKVKLVADVPGTGSSKDGEVQQVSAGTTESGGKGAVEGSGDNGDRSQGV 744
>01_06_1123 +
34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 248 QNNHQVITNGNVNSIRNSNYNGNLP 322
QN+ QV+ + N++ N N NGN P
Sbjct: 638 QNSSQVMGSQAANNMNNENRNGNYP 662
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 409 LQRYCCGLAWSCQRSIQHCRQWSSQ 483
L+R CC RSI C++W +Q
Sbjct: 1552 LRRSCCPSELDFLRSISRCKKWGAQ 1576
>07_03_1779 -
29458889-29459249,29461107-29461283,29461374-29461573,
29461673-29462752
Length = 605
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/68 (20%), Positives = 29/68 (42%)
Frame = +2
Query: 266 ITNGNVNSIRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRPALLAVSDCNVIVVDWRGLA 445
+ NG++N R YN + + SN + +R ++A +W+G+
Sbjct: 349 VNNGSLNVFRAHEYNATVEFYWAPFLVQSNSDDPQVHSVRDRVIAWRSIAKHAANWKGVH 408
Query: 446 NGLYNTAV 469
++NT +
Sbjct: 409 YLVFNTYI 416
>07_03_1342 -
25891761-25892102,25892588-25893135,25893342-25895012,
25895818-25896745
Length = 1162
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +3
Query: 210 VQTTNTGFS---PDVTKTTIKLLQMAMSTLSGT 299
V + GFS P V TT+KLL ++ +T SG+
Sbjct: 301 VDLSRNGFSGSVPVVNSTTLKLLNLSSNTFSGS 333
>07_03_0865 +
22130880-22130921,22131938-22132170,22132268-22132385,
22132474-22132656,22132859-22132960
Length = 225
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -3
Query: 519 SQTKKLPRNCPTLGTPLTAVLYRPLARPRQSTTITLQSETASKAGRI 379
S +L R+ +LG P+ + + PR +TTIT Q+ ++ A R+
Sbjct: 10 SNPTQLCRSRASLGKPVKGLGFGRERVPRTATTITCQAASSIPADRV 56
>03_05_0717 +
27097367-27097621,27097744-27097866,27098136-27098303,
27098393-27100072
Length = 741
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 430 VHNNNV-AVGDGQQGGADHGVHSGVSVAVPAVDNNKERQVSIVV 302
++N N+ VG GQ GG+ HG+ V + + KE +V V+
Sbjct: 285 IYNGNLYRVGKGQGGGSGHGIQV-FKVEILKSNEYKEVEVPFVI 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,016,741
Number of Sequences: 37544
Number of extensions: 382683
Number of successful extensions: 1380
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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