Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13b17f
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    31   0.13 
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    27   2.8  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    27   2.8  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   4.9  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   4.9  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    25   6.5  
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    25   6.5  
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    25   8.6  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   8.6  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    25   8.6  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    25   8.6  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    25   8.6  

>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 66  ASYNSRRCQHRCRL-GRQIRSPADHAVRSGSGKTLRAGPAHRWDAP 200
           A Y++ + Q    L G QIRS +  A  SG+G TL  G A R+  P
Sbjct: 187 ADYSTMKLQQLLALSGNQIRSSSSKAKISGTGITLNLGAASRFLMP 232


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 293 RPTYS-SMLKVVTYLKDNFPSLWNSINRLYMPRGVPPV 183
           R  YS S++++   LK ++  L  + +  + PRG PPV
Sbjct: 410 RSLYSPSLMQMQQSLKSDYEGLGRTFDPRFAPRGSPPV 447


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 99  CRLGRQIRSPADHAVRSGSGKTLRAGPAHRWDAPRHVQTVD 221
           C   R  R PA+ +  S        G  H WD   H++++D
Sbjct: 185 CNRVRSARRPANSSKESLLASFHETGKVHIWDIAPHLRSLD 225


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 325  YMWNEFFKHIDIEPSNAHVLDGNASDLV 408
            + +N+  K+ D+   +AHV+   A+DLV
Sbjct: 1015 HRYNDIVKYADLTTQDAHVIKKIAADLV 1042


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 165  VSSRTRSELRDPLENESGGPVGNDAGIFENYKTHSSGLPCELT 37
            VS+  +   +  LE+ S   V N   +F + K H S  PC+L+
Sbjct: 1416 VSNENQEVYKFSLEDLSSTYVANLEDLFPSEKNHISYSPCQLS 1458


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -2

Query: 252 ER*LPFLVELYQPFVHAEGRPTGGQAQHEVSSRTRSELRDPLE-NESGGPVG 100
           E+ L  +V+L Q  +HA   PT G+   +  +     LRD    N   GP G
Sbjct: 162 EKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSG 213


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 268 FNMDEYVGLPRDHPESY 318
           ++ +  + LPRDHPE Y
Sbjct: 82  YDTERKISLPRDHPEYY 98


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 121 VLQRITQFAPGPGRHFV 171
           V  RI    PGPG+H++
Sbjct: 109 VANRIFSLVPGPGKHYI 125


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 138 AVRSGSGKTLRAGPAHRWDAPRHVQTVDRVPQG 236
           A+ +G G T  +G  HR+      QT +R P G
Sbjct: 59  ALAAGVGGTRASGYTHRFSIRPSSQTYNRYPNG 91


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 194 VPPVGRPSTKCLPGPGANCVIRWR 123
           V  +G  S   +PG G + V+RW+
Sbjct: 590 VSEIGIESFNAVPGEGVDVVLRWK 613


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
 Frame = +3

Query: 147 SGSGKTLRAG-PA-----HRWDAPRHVQTVDRVPQGREVIFQICDHFQ 272
           +GSGKTL  G P         DA ++VQ +   P  RE+  QIC HF+
Sbjct: 168 TGSGKTLAFGIPILEHCLRNVDA-KYVQALVVAPT-RELAHQICQHFE 213


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +1

Query: 268 FNMDEYVGLPRDHPESYHYY--MWNEFFKHIDIEPSN-AHVLDGNASD 402
           F +  +VG+    P S HY+    N++F ++D   ++ AH     AS+
Sbjct: 201 FEIRSFVGITGGRPRSAHYFYARQNQYFFYLDPHCTHFAHTTTQPASE 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,422
Number of Sequences: 5004
Number of extensions: 51469
Number of successful extensions: 164
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)