Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13b17f
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0355 + 3912019-3913046,3914354-3914678 32 0.41
09_06_0039 - 20423829-20424308,20424664-20424729,20425969-204261... 29 2.9
06_03_0121 + 16864735-16865619,16865706-16866026 29 2.9
12_01_0631 - 5234452-5234468,5234536-5234839,5234926-5235810 29 3.8
09_04_0254 + 16131779-16132475,16132609-16132768,16132944-161329... 29 3.8
08_01_0831 + 8086470-8087354,8087441-8087730,8096373-8096412,809... 29 3.8
06_03_0573 + 22407489-22408373,22408460-22408795 29 3.8
03_03_0153 - 14910420-14910769,14910946-14911008,14911084-149113... 29 3.8
08_02_1479 + 27390852-27391059,27392017-27392138,27392227-273923... 28 5.0
07_01_1077 - 9687394-9687515,9696615-9696733,9696815-9697104,969... 28 5.0
04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339 28 5.0
03_04_0145 + 17683681-17683982,17686058-17686145 28 5.0
12_02_0442 - 19118536-19119222 27 8.7
10_08_0231 - 16045293-16045309,16045377-16045677,16045764-16046648 27 8.7
05_05_0084 - 22262007-22262300,22262435-22262707,22263418-222634... 27 8.7
03_06_0603 + 34999083-34999703,35000092-35000177,35000400-350007... 27 8.7
03_03_0036 + 13980923-13981504,13982672-13983208 27 8.7
02_05_0162 + 26398252-26399886 27 8.7
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 27 8.7
>10_01_0355 + 3912019-3913046,3914354-3914678
Length = 450
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 470 PMNKCTPPASCMSFSKR*HSSTKSDALPSSTCALLGSMSMCLKNSFH 330
P+N P +SF ++ +S A PS+TC+LLG + L S H
Sbjct: 58 PINPTAGPGPSLSFYSLSSAALRSVAAPSATCSLLGHTNSHLLFSDH 104
>09_06_0039 -
20423829-20424308,20424664-20424729,20425969-20426104,
20426222-20426415
Length = 291
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 472 GIGPDGHIAFNEPGSSLVSRTR 537
G+GPDGHIA PG LV+ +
Sbjct: 186 GMGPDGHIASLFPGHPLVNENK 207
>06_03_0121 + 16864735-16865619,16865706-16866026
Length = 401
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 114 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 200
Q RSP H V+ G G T+R+ P + P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDPQPQTSKP 336
>12_01_0631 - 5234452-5234468,5234536-5234839,5234926-5235810
Length = 401
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 114 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 200
Q RSP H V+ G G T+R+ P + P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDPQPQTSNP 336
>09_04_0254 +
16131779-16132475,16132609-16132768,16132944-16132992,
16133158-16133271,16133434-16133958,16135538-16135969,
16138882-16138956,16139530-16139625,16140610-16140725,
16140822-16140992,16141080-16141239,16141328-16141513,
16141624-16141752,16141837-16141915,16142034-16142143
Length = 1032
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 534 RPRHQRGARFVERDVTVRTDTSDEQMHSASLLYEFLKA 421
R H+R A ++ D T TDTSD + ++ + EF A
Sbjct: 13 RSGHRRIADYLADDQTTNTDTSDNESYTTAYGDEFFAA 50
>08_01_0831 +
8086470-8087354,8087441-8087730,8096373-8096412,
8096878-8096957,8099643-8099733,8099989-8100052,
8100553-8100818
Length = 571
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 114 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 200
Q RSP H V+ G G T+R+ P + P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDPQPQTSNP 336
>06_03_0573 + 22407489-22408373,22408460-22408795
Length = 406
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 114 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 200
Q RSP H V+ G G T+R+ P + P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDPQPQTSNP 336
>03_03_0153 -
14910420-14910769,14910946-14911008,14911084-14911339,
14911432-14911522,14911798-14912096,14912177-14912295,
14922536-14922594,14922676-14922965,14923052-14923567,
14923634-14923936
Length = 781
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 114 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 200
Q RSP H V+ G G T+R+ P + P
Sbjct: 286 QRRSPRQHTVQGGGGPTIRSDPQPQTSNP 314
>08_02_1479 +
27390852-27391059,27392017-27392138,27392227-27392350,
27392641-27392702,27392778-27392859,27393338-27393410,
27397092-27397227,27397337-27397386,27397542-27397590,
27398352-27398831
Length = 461
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 460 LFIGGIGPDGHIAFNEPGSSLVSRTRVKTLAY 555
L + G+GPDGH+A PG +V+ +K ++Y
Sbjct: 352 LMLLGMGPDGHVASLFPGHPVVNE-NLKWVSY 382
>07_01_1077 -
9687394-9687515,9696615-9696733,9696815-9697104,
9697191-9698075
Length = 471
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 114 QIRSPADHAVRSGSGKTLRAGP 179
Q RSP H V+ G G T+R+ P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDP 329
>04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339
Length = 503
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 114 QIRSPADHAVRSGSGKTLRAGP 179
Q RSP H V+ G G T+R+ P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDP 329
>03_04_0145 + 17683681-17683982,17686058-17686145
Length = 129
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -2
Query: 186 GGQAQHEVSSRTRSELRDPLENESGGPVGNDAG 88
GG+ V SR RSE+RD + +++ GP DAG
Sbjct: 42 GGEQSGGVWSR-RSEMRDVVGSDAMGPAERDAG 73
>12_02_0442 - 19118536-19119222
Length = 228
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 138 AVRSGSGKTLRAGPAHRWDAPRHVQTVDRVPQGREVIFQICDHFQHGR 281
A R G G+ A RW + R V+ +DR P + D + GR
Sbjct: 21 APRQGLGRAKPRSEATRWQSRRPVRRLDRSPDPPPPLLPGADGREEGR 68
>10_08_0231 - 16045293-16045309,16045377-16045677,16045764-16046648
Length = 400
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 114 QIRSPADHAVRSGSGKTLRAGP 179
Q RSP H V+ G G T+R P
Sbjct: 308 QHRSPRQHTVQGGGGPTIRLDP 329
>05_05_0084 -
22262007-22262300,22262435-22262707,22263418-22263468,
22263944-22264035,22264715-22264724
Length = 239
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -3
Query: 293 RPTYSSMLKVVTYLKDNFPSLWNSINRLYMPRGVPPVGRPSTKC 162
R + L V YLK + P+ W ++ +LY +G + C
Sbjct: 57 RAKKGTKLSVENYLKPDIPATWQAMEKLYDSGKARAIGVSNFSC 100
>03_06_0603 +
34999083-34999703,35000092-35000177,35000400-35000796,
35000906-35001154,35001522-35001749,35002524-35002973,
35003848-35003961,35004171-35004216,35004408-35004574
Length = 785
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = -3
Query: 167 KCLPGPGANC---VIRWRTNLAAQSATMLASSRIIRRIVRDYRANSQDVLPAVKNIIH 3
K GPG C V+ WR S + A + R++ DY + + + N++H
Sbjct: 80 KSAAGPGVQCDVDVVSWRERRVFASVAVAADVDTVWRVITDY----ERLAEFIPNLVH 133
>03_03_0036 + 13980923-13981504,13982672-13983208
Length = 372
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -1
Query: 229 GTLSTVCTCRGASHRWAGPARSVFPDPERTA*SAGERIWRPSR 101
G L+ RGA P+R P P+R A SA R+ PSR
Sbjct: 43 GDLAATEWLRGAIPLPYDPSRPARPPPDRPARSAAVRLLPPSR 85
>02_05_0162 + 26398252-26399886
Length = 544
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +3
Query: 42 VRTVIPNYASYNSRRCQHRCRLGRQIRSPADHAVRSGSGKTLRAGPAHRWDAPRHVQTVD 221
V V+P +AS ++ + R + +P+ ++RS S T AG A + H+ +D
Sbjct: 17 VHGVVPRHASPTPQQ-RAAPRREQSPLNPSSQSIRSASSGTELAGSAATEASRAHIANLD 75
Query: 222 RV 227
RV
Sbjct: 76 RV 77
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 480 SGRS-HRVQRTGLLAGVSDASEDPGLRH 560
SGRS H V + G+L+G + +ED +RH
Sbjct: 229 SGRSNHNVSQGGVLSGDENHTEDTAVRH 256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,668,183
Number of Sequences: 37544
Number of extensions: 414298
Number of successful extensions: 1383
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -