Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13b16r
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    46   4e-06
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    34   0.021
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    28   1.0  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   4.1  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   7.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.5  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   9.5  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   9.5  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 29/108 (26%), Positives = 51/108 (47%)
 Frame = -1

Query: 651 IQNMVYLDMVVSELLRLWPPGVSMDRICVQDYNLGKPNDKAKRDFILRKGTGVAIPVWAF 472
           ++ M Y   VV E LRL PP      + +  Y + K       D+ + K   V   ++  
Sbjct: 366 MEKMTYTRAVVKECLRLRPP------VLMVPYRVKKAFPITP-DYTVPKDAMVIPTLYGA 418

Query: 471 HRNPEFFPDPLKFDPERFSEENKHNIKPFAYLPFGVGPRNCIGSRFAL 328
             + + +P+P  F+P+R++        P  ++ FG GP  C+G R+A+
Sbjct: 419 LHDSKVYPEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYAV 466


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
 Frame = -1

Query: 648 QNMVYLDMVVSELLRLWPPGVSMDRICVQDYNLGKPNDKAKRDFILRKGTGVAIPVWAFH 469
           ++M  L+ V+ E LRL PP  S  R   +D  L  P  K     ++     +        
Sbjct: 334 KDMPLLNYVIQETLRLHPPIHSHMRKVKRD--LPVPGSK----IVIPANNYLLAAPGLTA 387

Query: 468 RNPEFFPDPLKFDPERFSE-----ENKHNI--------KPFA--YLPFGVGPRNCIGSRF 334
              E+F     FDP+R+++     EN   I        K  A  YLPFG G   CIG +F
Sbjct: 388 TEEEYFTHATDFDPKRWNDRVNEDENAEQIDYGYGLVTKGAASPYLPFGAGRHRCIGEQF 447

Query: 333 A 331
           A
Sbjct: 448 A 448


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 1   KKQYNSNVSHKTFYSFKIIND 63
           KKQ+ + V H  FY   IIND
Sbjct: 209 KKQWETGVGHMCFYPLSIIND 229


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 581 WIESAFKTTTWGNQMTRPKETSYFAK 504
           WI++ F++T  GN      +T +F+K
Sbjct: 480 WIQNRFQSTVLGNMEDIQSQTEFFSK 505


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 375 VDTRKA*CCVCSPLRTF 425
           V+T +A CC+CS L  F
Sbjct: 595 VETGRAICCICSSLHKF 611


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 485 PYGLSTETRNSSRTP*NSIPKGSQRRTNTTSSLS 384
           P   S+ T  SS    +SIP  S   ++T+SSLS
Sbjct: 222 PSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLS 255


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 354 NCIGSRFALCEVKVMAYQLLQHMEISP 274
           NC+GS   + ++      LL HM+++P
Sbjct: 248 NCLGSSLDVKKLSKQRETLLSHMQVNP 274


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 531 PCHLVSPSCSLERRFYPWRHLAATALGVLKQPYP 632
           P  L SPS    + FYP    + ++ G+ K P P
Sbjct: 404 PMELPSPSTVYHQVFYPPTSTSVSSYGLGKTPQP 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,693
Number of Sequences: 5004
Number of extensions: 54668
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)