Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13b16f
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0093 + 18992027-18993514                                         31   0.87 
09_02_0585 - 10939328-10939724,10940242-10940431,10940722-109407...    29   3.5  
08_01_0139 + 1105857-1107008,1107124-1107328,1107583-1107768,110...    28   6.1  

>11_05_0093 + 18992027-18993514
          Length = 495

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 435 HRIYKLISTNESFFWKFVVQLRNIINKMVNLEDNLAHVA 319
           H +Y   ST+   FW+FV   R I +  + + D L HVA
Sbjct: 236 HDMYASASTSRDLFWRFVRSFRGIRSLKLKVSD-LKHVA 273


>09_02_0585 -
           10939328-10939724,10940242-10940431,10940722-10940790,
           10941080-10941206,10941401-10941696,10941791-10941954,
           10942453-10942601
          Length = 463

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +1

Query: 364 DISQLYNKFPEERFVGRYEFVNPVIY--IRD-IEIVKRITIKDFEHFLDHRTIVNEETDP 534
           ++ +  N F  ERF+G+  F  PV Y  + D IE+  +I  +   H LD      +    
Sbjct: 153 ELEKFTNNF--ERFIGQGGF-GPVFYGCLEDGIEVAVKIRSESSSHGLDQFFAEVQSLTK 209

Query: 535 IFGRNLXSLKG 567
           +  RNL SL G
Sbjct: 210 VHHRNLVSLVG 220


>08_01_0139 +
           1105857-1107008,1107124-1107328,1107583-1107768,
           1107924-1108133,1108552-1109186
          Length = 795

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -3

Query: 417 ISTNESFFWKFVVQLRNIINKMVNLEDNLAHVA 319
           + T ESF+  FVV L+N++   V++  NL+ ++
Sbjct: 599 VPTTESFWNPFVVSLQNLLKCNVDIRINLSPIS 631


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,194,857
Number of Sequences: 37544
Number of extensions: 241004
Number of successful extensions: 533
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)