Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13b15f
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    29   0.015
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   4.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 29.5 bits (63), Expect = 0.015
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 243 FCEFCRRVVRKLRWRQPSNAKATDSGGKIYMGTERSSLRTCKGTS 109
           FC+  +R + K++WR+P  A   +     Y+  E ++LRT  G S
Sbjct: 24  FCQPTQRTMSKIQWRKPKPAMVEEKTQLRYL-EELNALRTELGAS 67


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 158 ILPPESVALALLG 196
           I+PP S+A+ LLG
Sbjct: 301 IIPPTSLAIPLLG 313


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +3

Query: 69   TYALTMSDAPGRPMKFPYTFSAKIAQF 149
            TY  T  D PG P       S+  A F
Sbjct: 1205 TYCQTEEDVPGSPADIKVVVSSPQALF 1231


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +3

Query: 69   TYALTMSDAPGRPMKFPYTFSAKIAQF 149
            TY  T  D PG P       S+  A F
Sbjct: 1201 TYCQTEEDVPGSPADIKVVVSSPQALF 1227


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 10  LRKLKRLSQIIKCFQSFL 63
           LRK K L   I CF S+L
Sbjct: 411 LRKRKELFIAIVCFVSYL 428


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 10  LRKLKRLSQIIKCFQSFL 63
           LRK K L   I CF S+L
Sbjct: 464 LRKRKELFIAIVCFVSYL 481


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 171 SGGKIYMGTERSSLRTCKGTSWGDQGRP 88
           S GK+ M T      +   T WG+  RP
Sbjct: 821 STGKVEMITGVGKATSPNLTKWGNPNRP 848


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,924
Number of Sequences: 438
Number of extensions: 2405
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)