Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13b13r
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    45   1e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    29   0.72 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.9  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    25   8.9  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   8.9  

>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 20/52 (38%), Positives = 30/52 (57%)
 Frame = -2

Query: 616 ILEVEMPFDKXKNQRKGFCFITFESXQVVNDLLKTPKRTIGGKEVDXKRATP 461
           +L+  +  DK   + +GF F+T+E+   V   +  P  TI GK V+ KRATP
Sbjct: 273 VLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATP 324



 Score = 35.5 bits (78), Expect = 0.006
 Identities = 16/52 (30%), Positives = 32/52 (61%)
 Frame = -2

Query: 616 ILEVEMPFDKXKNQRKGFCFITFESXQVVNDLLKTPKRTIGGKEVDXKRATP 461
           +L+  +  D    + +GF F+TF++ + VN+++ + +  + GK +D KRA P
Sbjct: 189 VLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-SKEHHLDGKIIDPKRAIP 239


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 610 EVEMPFDKXKNQRKGFCFITF-ESXQVVNDLLKTPKRTIGGK 488
           +V MP DK  N  KGF +I F ++   V   L+   +   G+
Sbjct: 351 QVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGR 392


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 258  PPXPS*P*PPXP*LSYPPP 314
            PP  S P PP P +S PPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPP 1717


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 112 LNLSGSVSCVAXASRVGVAVWSALRRL 192
           +NL  SV  ++ A+ +G A+W  L+ L
Sbjct: 360 MNLEESVRAISPAANIGWALWGILQCL 386


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/52 (23%), Positives = 21/52 (40%)
 Frame = -2

Query: 616 ILEVEMPFDKXKNQRKGFCFITFESXQVVNDLLKTPKRTIGGKEVDXKRATP 461
           I  + +P D    + KGF ++TF         ++     I G+      +TP
Sbjct: 392 IQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTP 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,368,284
Number of Sequences: 5004
Number of extensions: 17018
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)