Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13b09r
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0986 - 12976344-12976679,12977962-12978081,12978414-129787...    31   1.1  
11_04_0443 - 17808897-17809110,17809169-17813652                       29   2.5  

>03_02_0986 -
           12976344-12976679,12977962-12978081,12978414-12978786,
           12978934-12978970,12979160-12979196
          Length = 300

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = -2

Query: 523 LSLIRR-LNFKICLLLWFSYNFFIFCKNIVWLYYYLLI--HFAMAPDKLGR*GCLVFIVI 353
           L++IR+ +  K    + F  +FF+    +VW +Y LL+   F   P+ LG    L  +V+
Sbjct: 146 LTIIRQVIRTKSVEFMPFWLSFFLTLSAVVWFFYGLLMKDFFVATPNVLGLLFGLAQMVL 205

Query: 352 YVI 344
           YV+
Sbjct: 206 YVV 208


>11_04_0443 - 17808897-17809110,17809169-17813652
          Length = 1565

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/73 (28%), Positives = 38/73 (52%)
 Frame = -2

Query: 349 VIKQRLNNVCESII*FF*HGHKIRRMDLHRTNDNKKCDYIDEL*VSCVYVHFT*RHIHFV 170
           V+K++L+++   I+ F     KIRR+ +   N + KC  I+E+ +     +   ++IH  
Sbjct: 92  VVKKQLSSIHPEILLFL---TKIRRLSVREDNSDPKCSTINEISMESEKNYQVRKNIH-A 147

Query: 169 ECYC*LFSSLINK 131
           E Y    S+  NK
Sbjct: 148 ESYTLHLSAQENK 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,657,000
Number of Sequences: 37544
Number of extensions: 226184
Number of successful extensions: 311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)