Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13b09f
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.4  
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    22   5.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.3  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.6  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   9.6  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   9.6  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   9.6  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   9.6  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   9.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 332 YKYLLELLGKTYDHPLVQLFRKRFPYYE 415
           + YLL    K YDHP   L  KR+ + E
Sbjct: 29  FSYLLNC--KNYDHPTTLLKLKRYLFCE 54


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 507 LARICATSSSGVNFVLSSC 451
           L R+C   +SG ++ + SC
Sbjct: 8   LCRVCGDKASGFHYGVHSC 26


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 507 LARICATSSSGVNFVLSSC 451
           L R+C   +SG ++ + SC
Sbjct: 66  LCRVCGDKASGFHYGVHSC 84


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 528 LIMANRLASV*LQFLVTLIRLSVEHSKKLL 617
           L  A R+ASV  +    L  LSV+H   +L
Sbjct: 526 LTNARRVASVRAETYCNLFSLSVDHFNAVL 555


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 528 LIMANRLASV*LQFLVTLIRLSVEHSKKLL 617
           L  A R+ASV  +    L  LSV+H   +L
Sbjct: 494 LTNARRVASVRAETYCNLFSLSVDHFNAVL 523


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 123 LKSIGNNTTHNTLY 82
           + S+ NNT HN  Y
Sbjct: 81  ISSLSNNTIHNNNY 94


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 123 LKSIGNNTTHNTLY 82
           + S+ NNT HN  Y
Sbjct: 81  ISSLSNNTIHNNNY 94


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 123 LKSIGNNTTHNTLY 82
           + S+ NNT HN  Y
Sbjct: 82  ISSLSNNTIHNNNY 95


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 123 LKSIGNNTTHNTLY 82
           + S+ NNT HN  Y
Sbjct: 82  ISSLSNNTIHNNNY 95


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 123 LKSIGNNTTHNTLY 82
           + S+ NNT HN  Y
Sbjct: 82  ISSLSNNTIHNNNY 95


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 123 LKSIGNNTTHNTLY 82
           + S+ NNT HN  Y
Sbjct: 82  ISSLSNNTIHNNNY 95


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 123 LKSIGNNTTHNTLY 82
           + S+ NNT HN  Y
Sbjct: 315 ISSLSNNTIHNNNY 328


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 100 HTQHTIHFWKY 68
           H+ + IH WKY
Sbjct: 33  HSMNVIHEWKY 43


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 407 YYEIVESDRGTIEFVHDDKTKFTPEE 484
           YYE+  +     +F+ D  +  TPE+
Sbjct: 310 YYEVGSNVPFNFKFITDANSSSTPEQ 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,061
Number of Sequences: 438
Number of extensions: 4263
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)