Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13a17f
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    26   2.1  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    24   8.6  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    24   8.6  

>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = +1

Query: 169 VLNKESKENKSPRISQLSMAQIVLSRQHMSSRGSLPQVTIFNTFVRVSTGSTPSGITQSF 348
           V+  + K  KS    +LS  Q  L ++ +    ++P+  + NT+   S+ ST + +   +
Sbjct: 657 VVGIKPKNIKSSNTVKLSSQQ--LKKESVLLNCTIPEFNVSNTYFTFSSPSTDNFVIAVY 714

Query: 349 RQKHS 363
           ++ HS
Sbjct: 715 QRGHS 719


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 274 PQVTIFNTFVRVSTGSTPSGITQSFRQKHSNA 369
           P++ + +TF R+ST  + +    S  +  SNA
Sbjct: 509 PKIPLISTFTRLSTRKSSNDFNSSNSRPSSNA 540


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 207 SWTLVFLTLLVEH 169
           SWT+VF TL+V H
Sbjct: 59  SWTIVFKTLIVFH 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,669,044
Number of Sequences: 5004
Number of extensions: 29316
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)