Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13a17f
         (426 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1606 + 28111158-28111328,28111431-28111549,28111984-281120...    29   1.2  
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13...    28   3.6  
11_08_0009 + 27600881-27602592,27602665-27603008,27603159-276038...    27   4.8  
01_06_0709 - 31367152-31367532,31367762-31368035,31368474-31370557     27   4.8  
08_01_0279 - 2277487-2278161,2278513-2278662,2278749-2278843,227...    27   6.3  
05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468     27   6.3  
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116...    27   8.3  

>07_03_1606 +
           28111158-28111328,28111431-28111549,28111984-28112024,
           28112654-28112713,28112812-28112858,28112939-28113133,
           28113236-28113282,28113363-28113429,28113521-28113621,
           28113725-28113826,28113904-28114042,28114120-28114182,
           28114323-28114406,28114981-28115295
          Length = 516

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +3

Query: 27  SHMFIFKKSVFVLYFL*YILKNDS---VHYNSWSIVIS*HRIYSSFSV 161
           SH+F+F + +F +Y L  I+ N     + + SWSI  +   I+S  ++
Sbjct: 74  SHLFVFSEDLFFIYLLPPIIFNAGFCLLEFYSWSIYSAAIAIFSRMNI 121


>03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-132773,
            132883-132996,133065-133193,133293-133469,133555-133746,
            134844-134981,135327-135559,135900-136003,136633-136727,
            136817-137053,137801-137922,138252-138354,138750-138826,
            138909-139017,139107-139253,139953-140000,140292-140492,
            140589-140738,140917-141002,141088-141193,141278-141373,
            141759-141911,142647-142819,142923-142986,144056-144193,
            144548-144595,144690-144836,144907-144968,146540-146645,
            147357-147461,147548-147679,147765-147974,148070-148171,
            148261-148398
          Length = 1729

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 213  AVIDGANSSVATAHVVSRKLTSSDNFQYIRPRQHWKHT 326
            +VI   + + AT H+ S  +   DN  ++ P+    HT
Sbjct: 1050 SVISSTSHAYATPHLPSNSMVEDDNVAFMMPKHVSSHT 1087


>11_08_0009 +
           27600881-27602592,27602665-27603008,27603159-27603806,
           27603908-27604296
          Length = 1030

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 193 NKSPRISQLSMAQIVLSRQHMSSRGSLPQVTIFNTFVRVSTGSTPSGI 336
           N +P +S L++A   LS    +  GSLP +   +  V    G  P G+
Sbjct: 202 NNTPLLSYLNIANNSLSGSIPACIGSLPMLQFLDLQVNQLAGPVPPGV 249


>01_06_0709 - 31367152-31367532,31367762-31368035,31368474-31370557
          Length = 912

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 9/40 (22%), Positives = 24/40 (60%)
 Frame = +3

Query: 243 ATAHVVSRKLTSSDNFQYIRPRQHWKHTEWHHSEFQTKTF 362
           ATA  ++  ++ S+  +++R  +H+++   H   + +K+F
Sbjct: 533 ATAEALNEAISMSEQEKHLRHEKHYRYVSTHDVAYWSKSF 572


>08_01_0279 -
           2277487-2278161,2278513-2278662,2278749-2278843,
           2279367-2279865
          Length = 472

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 259 SRGSLPQVTIFNTFV-RVSTGSTPSGITQSF 348
           SRGS  +V +F TFV  ++  +   G+ QSF
Sbjct: 159 SRGSFEEVIMFTTFVIAIAAATAAIGLIQSF 189


>05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468
          Length = 898

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +3

Query: 243 ATAHVVSRKLTSSDNFQYIRPRQHWKHTEWHHSEFQTKTF*R---RRCRQTNYFIKP 404
           ATA  ++  ++ S+  + +R  +H+++   H   + +K+F +   R C+  ++F KP
Sbjct: 520 ATAEALNEAISMSEREKQLRHEKHYRYVSTHDVAYWSKSFVQDLERACK--DHFRKP 574


>05_01_0168 +
           1162459-1162785,1163609-1163719,1163853-1163969,
           1164082-1164240,1164663-1164797,1165116-1165268,
           1165358-1165479,1165599-1166541,1166677-1166728,
           1166873-1167963,1168058-1168384,1168479-1168559,
           1168649-1168717,1168809-1168937,1169038-1169121,
           1169210-1169275
          Length = 1321

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 187 KENKSPRISQLSMAQIVLSRQHMSSRGSLPQVTIFNTFVRVSTGSTPSGITQS 345
           + NKS +IS  S   I L R H     SL +   F+T   + TG  P  + +S
Sbjct: 762 RRNKSKKISSHSSYNIQLCRVHEKLEMSLLKDPFFST---ILTGKLPGDLDES 811


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,684,479
Number of Sequences: 37544
Number of extensions: 158148
Number of successful extensions: 396
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)