Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13a17f
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...    31   0.46 
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...    31   0.46 
AC090999-21|AAK26150.1|  530|Caenorhabditis elegans Hypothetical...    28   3.2  
Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z75710-8|CAO82023.1|  394|Caenorhabditis elegans Hypothetical pr...    26   9.8  
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    26   9.8  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 201 SKNFAVIDGANSSVAT-AHVVSRKLTSSDNFQYIRPRQHWKHTEWHHSEFQTKTF*RRRC 377
           S    +IDG N  +   A +V++KL   D    +R  +      +H S+ +  +F R+RC
Sbjct: 4   SNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRC 63


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 201 SKNFAVIDGANSSVAT-AHVVSRKLTSSDNFQYIRPRQHWKHTEWHHSEFQTKTF*RRRC 377
           S    +IDG N  +   A +V++KL   D    +R  +      +H S+ +  +F R+RC
Sbjct: 4   SNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRC 63


>AC090999-21|AAK26150.1|  530|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.2 protein.
          Length = 530

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 9   FLTLSCSHMFIFKKSVFVLYFL*YILKNDSVHYNSWS 119
           F+ L     F FKK  F+L FL + LKN  V + S S
Sbjct: 460 FIVLKNHLFFGFKKQFFLLEFLTFSLKNVFVEFASTS 496


>Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical
           protein C01G6.5 protein.
          Length = 952

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 172 LNKESKENKSPRISQLSMAQIVLSRQHMSSRGSLPQVTIFNTFVRVSTGS-TPSGITQS 345
           ++K  + + +PRI   S    V+S         LP+VT   +   VST S TP+ +++S
Sbjct: 564 IDKNVRMSSTPRIDAQSTPSAVVSALPTPMNSPLPRVTSSKSAQDVSTPSTTPNPVSRS 622


>Z75710-8|CAO82023.1|  394|Caenorhabditis elegans Hypothetical
           protein D1081.10 protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +3

Query: 156 SVSHRAQQGE*GKQESKNFAVIDGANSSVATAHVVSRKLTSSDNFQYIRPRQHWKHTEWH 335
           S S  +Q+ E GK   K+       NSS+      +   T+  NF+ +  RQ WK  E  
Sbjct: 160 SKSDSSQEKESGKWTWKSDET--PVNSSICETDRSANYHTNGMNFRVLDSRQQWKKVEEI 217

Query: 336 H 338
           H
Sbjct: 218 H 218


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical
           protein ZC373.4 protein.
          Length = 1211

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 192 KQESKNFAVIDGANSSVATAHVVSRKLTSSDNFQYIRP 305
           K++ K  A  DG+  +  T+ V  +KL  +D    +RP
Sbjct: 430 KKKKKKIANADGSTKTEKTSSVKKKKLVETDGDAGLRP 467


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,259,381
Number of Sequences: 27780
Number of extensions: 168878
Number of successful extensions: 416
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)